Variant report

Variant	rs73418515
Chromosome Location	chr6:33855604-33855605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869648	0.82[EUR][1000 genomes]
rs16869660	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58823120	0.86[EUR][1000 genomes]
rs58937462	0.86[EUR][1000 genomes]
rs6918090	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926599	1.00[EUR][1000 genomes]
rs6930960	1.00[EUR][1000 genomes]
rs73416177	0.82[EUR][1000 genomes]
rs73416178	0.86[EUR][1000 genomes]
rs73418511	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs744686	1.00[EUR][1000 genomes]
rs744687	1.00[EUR][1000 genomes]
rs744688	1.00[EUR][1000 genomes]
rs7746977	0.81[EUR][1000 genomes]
rs7748471	1.00[EUR][1000 genomes]
rs7748483	1.00[EUR][1000 genomes]
rs7767294	1.00[EUR][1000 genomes]
rs7767496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33850000-33860400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33850000-33871800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:33851200-33856200	Enhancers	Fetal Intestine Large	intestine
4	chr6:33852800-33856000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:33853400-33855800	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:33853600-33856000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:33854400-33856200	Weak transcription	Fetal Lung	lung
8	chr6:33854800-33855800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:33854800-33856200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:33855000-33862600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:33855200-33855800	Enhancers	Colonic Mucosa	Colon
12	chr6:33855200-33855800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:33855200-33856000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr6:33855200-33856400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr6:33855200-33860000	Weak transcription	Fetal Intestine Small	intestine
16	chr6:33855600-33856000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:33855600-33856800	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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