Variant report

Variant	rs7767496
Chromosome Location	chr6:33851746-33851747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16869648	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16869660	1.00[EUR][1000 genomes]
rs58823120	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs58937462	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6457746	0.84[AFR][1000 genomes]
rs6905771	1.00[MEX][hapmap]
rs6918090	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6926599	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930960	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73416177	0.82[EUR][1000 genomes]
rs73416178	0.86[EUR][1000 genomes]
rs73418511	0.87[EUR][1000 genomes]
rs73418515	1.00[EUR][1000 genomes]
rs744686	0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs744687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs744688	0.87[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7746977	0.81[EUR][1000 genomes]
rs7748471	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748483	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7767294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7767496	HLA-DPB1	cis	multi-tissue	Pritchard

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33844200-33852600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:33847200-33852000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:33847600-33852600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:33848200-33852800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:33848200-33853000	Weak transcription	Colonic Mucosa	Colon
6	chr6:33849200-33852000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:33850000-33860400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:33850000-33871800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:33850200-33852600	Weak transcription	Esophagus	oesophagus
10	chr6:33850200-33853600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:33850400-33852400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:33850400-33852400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:33850400-33852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:33850400-33852800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:33850400-33852800	Weak transcription	NHEK	skin
16	chr6:33850400-33853200	Weak transcription	Left Ventricle	heart
17	chr6:33850400-33853200	Weak transcription	Right Atrium	heart
18	chr6:33850400-33853200	Weak transcription	Right Ventricle	heart
19	chr6:33850400-33853800	Weak transcription	Fetal Lung	lung
20	chr6:33850600-33852200	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:33850600-33852400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:33851200-33856200	Enhancers	Fetal Intestine Large	intestine
23	chr6:33851400-33852800	Weak transcription	Small Intestine	intestine

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