Variant report

Variant	rs73416178
Chromosome Location	chr6:33847491-33847492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869648	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16869660	0.86[EUR][1000 genomes]
rs58823120	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58937462	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6457746	0.88[EUR][1000 genomes]
rs6918090	0.86[EUR][1000 genomes]
rs6926599	0.86[EUR][1000 genomes]
rs6930960	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73416177	0.96[EUR][1000 genomes]
rs73418515	0.86[EUR][1000 genomes]
rs744686	0.86[EUR][1000 genomes]
rs744687	0.86[EUR][1000 genomes]
rs744688	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7748471	0.86[EUR][1000 genomes]
rs7748483	0.86[EUR][1000 genomes]
rs7750485	0.91[EUR][1000 genomes]
rs7767294	0.86[EUR][1000 genomes]
rs7767496	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33839000-33848800	Weak transcription	Spleen	Spleen
2	chr6:33840800-33848000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:33844200-33852600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:33845600-33848800	Enhancers	Fetal Thymus	thymus
5	chr6:33845800-33848600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:33846000-33848200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:33846200-33848200	Enhancers	Fetal Intestine Large	intestine
8	chr6:33846200-33848600	Enhancers	Fetal Intestine Small	intestine
9	chr6:33846400-33847600	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:33846400-33849200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:33846600-33849200	Weak transcription	Pancreas	Pancrea
12	chr6:33846800-33848600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:33847200-33848200	Enhancers	Colonic Mucosa	Colon
14	chr6:33847200-33848600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:33847200-33849200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:33847200-33852000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:33847400-33848800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:33847400-33849000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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