Variant report

Variant	rs6918090
Chromosome Location	chr6:33854733-33854734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33854102..33857730-chr6:33861229..33863839,3	K562	blood:
2	chr6:33854716..33856938-chr6:33861229..33862785,2	K562	blood:
3	chr6:33854576..33856833-chr6:33873252..33875998,2	K562	blood:

Variant related genes	Relation type
ENSG00000249346	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869648	0.82[EUR][1000 genomes]
rs16869660	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58823120	0.86[EUR][1000 genomes]
rs58937462	0.86[EUR][1000 genomes]
rs6926599	1.00[EUR][1000 genomes]
rs6930960	1.00[EUR][1000 genomes]
rs73416177	0.82[EUR][1000 genomes]
rs73416178	0.86[EUR][1000 genomes]
rs73418511	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73418515	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs744686	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs744687	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs744688	1.00[EUR][1000 genomes]
rs7746977	0.81[EUR][1000 genomes]
rs7748471	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7748483	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7767294	1.00[EUR][1000 genomes]
rs7767496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6918090	HLA-DPB1	cis	multi-tissue	Pritchard

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33850000-33860400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33850000-33871800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:33851200-33856200	Enhancers	Fetal Intestine Large	intestine
4	chr6:33852200-33855400	Enhancers	Colon Smooth Muscle	Colon
5	chr6:33852400-33854800	Enhancers	Stomach Smooth Muscle	stomach
6	chr6:33852400-33855200	Enhancers	Fetal Intestine Small	intestine
7	chr6:33852400-33855200	Enhancers	NHDF-Ad	bronchial
8	chr6:33852600-33854800	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:33852600-33855000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:33852600-33855000	Enhancers	HSMMtube	muscle
11	chr6:33852600-33855000	Enhancers	Osteobl	bone
12	chr6:33852600-33855200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:33852800-33854800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr6:33852800-33855000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:33852800-33855000	Enhancers	NHLF	lung
16	chr6:33852800-33855200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:33852800-33855200	Enhancers	Small Intestine	intestine
18	chr6:33852800-33855400	Enhancers	NHEK	skin
19	chr6:33852800-33856000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:33853200-33855200	Enhancers	Left Ventricle	heart
21	chr6:33853200-33855200	Enhancers	Right Ventricle	heart
22	chr6:33853400-33855800	Enhancers	Rectal Smooth Muscle	rectum
23	chr6:33853600-33854800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:33853600-33854800	Bivalent Enhancer	Fetal Stomach	stomach
25	chr6:33853600-33855200	Enhancers	Fetal Heart	heart
26	chr6:33853600-33856000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr6:33854200-33854800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
28	chr6:33854200-33855000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:33854200-33855000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:33854200-33855200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:33854200-33855200	Enhancers	Hela-S3	cervix
32	chr6:33854400-33855000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:33854400-33856200	Weak transcription	Fetal Lung	lung
34	chr6:33854600-33854800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:33854600-33854800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr6:33854600-33855000	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr6:33854600-33855200	Enhancers	Primary T cells from cord blood	blood
38	chr6:33854600-33855200	Flanking Active TSS	Colonic Mucosa	Colon
39	chr6:33854600-33855200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr6:33854600-33855200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
41	chr6:33854600-33855600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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