Variant report

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:33846305-33847696	K562	blood:	n/a	n/a
2	CTCF	chr6:33846540-33846690	GM12872	blood:	n/a	n/a
3	USF1	chr6:33846323-33846729	ECC-1	luminal epithelium:	n/a	n/a

No data

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No.	Distal block	Cell Line	Cell type
1	chr6:33827215..33829847-chr6:33845943..33848537,2	MCF-7	breast:
2	chr6:33837980..33839549-chr6:33845032..33847078,2	K562	blood:
3	chr6:33804994..33807921-chr6:33844816..33847091,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITPR3-3	chr6:33845658-33847878	NONHSAT109010

No data

Variant related genes	Relation type
ENSG00000271362	TF binding region

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869648	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16869660	0.86[EUR][1000 genomes]
rs58937462	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6457746	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6918090	0.86[EUR][1000 genomes]
rs6926599	0.86[EUR][1000 genomes]
rs6930960	0.86[EUR][1000 genomes]
rs73416177	0.96[EUR][1000 genomes]
rs73416178	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73418515	0.86[EUR][1000 genomes]
rs744686	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs744687	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs744688	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7748471	0.86[EUR][1000 genomes]
rs7748483	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7750485	0.91[EUR][1000 genomes]
rs7767294	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7767496	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33839000-33848800	Weak transcription	Spleen	Spleen
2	chr6:33840800-33848000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:33844200-33852600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:33845200-33846800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:33845600-33848800	Enhancers	Fetal Thymus	thymus
6	chr6:33845800-33847200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr6:33845800-33848600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:33846000-33848200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:33846200-33848200	Enhancers	Fetal Intestine Large	intestine
10	chr6:33846200-33848600	Enhancers	Fetal Intestine Small	intestine
11	chr6:33846400-33847600	Enhancers	Duodenum Mucosa	Duodenum
12	chr6:33846400-33849200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr6:33846600-33847200	Enhancers	Small Intestine	intestine
14	chr6:33846600-33849200	Weak transcription	Pancreas	Pancrea

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