Variant report

Variant	rs73418511
Chromosome Location	chr6:33854121-33854122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33852232..33854497-chr6:33862990..33864814,2	MCF-7	breast:
2	chr6:33854102..33857730-chr6:33861229..33863839,3	K562	blood:

Variant related genes	Relation type
ENSG00000249346	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16869660	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6918090	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6926599	0.87[EUR][1000 genomes]
rs6930960	0.87[EUR][1000 genomes]
rs73418515	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs744686	0.87[EUR][1000 genomes]
rs744687	0.87[EUR][1000 genomes]
rs744688	0.87[EUR][1000 genomes]
rs7748471	0.87[EUR][1000 genomes]
rs7748483	0.87[EUR][1000 genomes]
rs7767294	0.87[EUR][1000 genomes]
rs7767496	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33850000-33860400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33850000-33871800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:33851200-33856200	Enhancers	Fetal Intestine Large	intestine
4	chr6:33852000-33854200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:33852000-33854600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr6:33852000-33854600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:33852200-33855400	Enhancers	Colon Smooth Muscle	Colon
8	chr6:33852400-33854800	Enhancers	Stomach Smooth Muscle	stomach
9	chr6:33852400-33855200	Enhancers	Fetal Intestine Small	intestine
10	chr6:33852400-33855200	Enhancers	NHDF-Ad	bronchial
11	chr6:33852600-33854200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:33852600-33854400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:33852600-33854800	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:33852600-33855000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:33852600-33855000	Enhancers	HSMMtube	muscle
16	chr6:33852600-33855000	Enhancers	Osteobl	bone
17	chr6:33852600-33855200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:33852800-33854400	Enhancers	HSMM	muscle
19	chr6:33852800-33854800	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:33852800-33855000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:33852800-33855000	Enhancers	NHLF	lung
22	chr6:33852800-33855200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:33852800-33855200	Enhancers	Small Intestine	intestine
24	chr6:33852800-33855400	Enhancers	NHEK	skin
25	chr6:33852800-33856000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:33853000-33854600	Enhancers	Colonic Mucosa	Colon
27	chr6:33853200-33854400	Enhancers	Right Atrium	heart
28	chr6:33853200-33855200	Enhancers	Left Ventricle	heart
29	chr6:33853200-33855200	Enhancers	Right Ventricle	heart
30	chr6:33853400-33854200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:33853400-33854200	Enhancers	Primary T cells fromperipheralblood	blood
32	chr6:33853400-33855800	Enhancers	Rectal Smooth Muscle	rectum
33	chr6:33853600-33854600	Enhancers	Fetal Muscle Leg	muscle
34	chr6:33853600-33854800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:33853600-33854800	Bivalent Enhancer	Fetal Stomach	stomach
36	chr6:33853600-33855200	Enhancers	Fetal Heart	heart
37	chr6:33853600-33856000	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:33853800-33854200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:33853800-33854400	Enhancers	Fetal Lung	lung
40	chr6:33854000-33854200	Flanking Active TSS	Hela-S3	cervix
41	chr6:33854000-33854600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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