Variant report

Variant	rs9469621
Chromosome Location	chr6:33848366-33848367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33827215..33829847-chr6:33845943..33848537,2	MCF-7	breast:
2	chr6:33805713..33808013-chr6:33847998..33849613,2	K562	blood:
3	chr6:33730312..33733510-chr6:33847562..33850265,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34433163	1.00[ASN][1000 genomes]
rs6933952	1.00[ASN][1000 genomes]
rs7746977	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33839000-33848800	Weak transcription	Spleen	Spleen
2	chr6:33844200-33852600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:33845600-33848800	Enhancers	Fetal Thymus	thymus
4	chr6:33845800-33848600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:33846200-33848600	Enhancers	Fetal Intestine Small	intestine
6	chr6:33846400-33849200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:33846600-33849200	Weak transcription	Pancreas	Pancrea
8	chr6:33846800-33848600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:33847200-33848600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:33847200-33849200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:33847200-33852000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:33847400-33848800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:33847400-33849000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:33847600-33849400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:33847600-33852600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:33848000-33848800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:33848000-33849200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:33848000-33849200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:33848200-33848400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr6:33848200-33849200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:33848200-33849600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:33848200-33849800	Weak transcription	Fetal Intestine Large	intestine
23	chr6:33848200-33852800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:33848200-33853000	Weak transcription	Colonic Mucosa	Colon

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