Variant report

Variant	rs73417479
Chromosome Location	chr15:57613511-57613512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57596677..57601983-chr15:57611239..57618411,9	K562	blood:
2	chr15:57022824..57027100-chr15:57611258..57614634,3	K562	blood:
3	chr15:57592002..57594571-chr15:57612516..57615928,4	K562	blood:
4	chr15:57610844..57612856-chr15:57612872..57614940,2	K562	blood:
5	chr15:57209252..57213677-chr15:57612967..57616292,5	K562	blood:
6	chr15:57022824..57025649-chr15:57612283..57614634,3	K562	blood:
7	chr15:57574448..57575948-chr15:57613094..57616013,2	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction
ENSG00000247982	Chromatin interaction
ENSG00000140262	Chromatin interaction
ENSG00000260172	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16977399	1.00[ASN][1000 genomes]
rs56827386	0.96[ASN][1000 genomes]
rs60059966	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv3359786	chr15:57611310-57613808	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57599600-57614200	Weak transcription	Small Intestine	intestine
2	chr15:57599600-57617800	Weak transcription	Spleen	Spleen
3	chr15:57602800-57617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:57605000-57619400	Weak transcription	Pancreas	Pancrea
5	chr15:57605600-57614400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:57611200-57615000	Enhancers	Fetal Muscle Trunk	muscle
7	chr15:57611400-57616400	Enhancers	Fetal Muscle Leg	muscle
8	chr15:57611400-57620600	Enhancers	Fetal Intestine Small	intestine
9	chr15:57612000-57614000	Enhancers	K562	blood
10	chr15:57612000-57615800	Enhancers	Fetal Intestine Large	intestine
11	chr15:57612400-57613600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:57612400-57613600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr15:57612400-57617800	Enhancers	Fetal Thymus	thymus
14	chr15:57612600-57613600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:57612600-57613600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr15:57612600-57613600	Enhancers	Brain Anterior Caudate	brain
17	chr15:57612600-57613600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr15:57612600-57613600	Enhancers	NHDF-Ad	bronchial
19	chr15:57612600-57613600	Enhancers	Osteobl	bone
20	chr15:57612600-57613800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:57612600-57615200	Weak transcription	Colonic Mucosa	Colon
22	chr15:57612600-57616000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:57612600-57616400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:57612600-57616400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:57612600-57616400	Weak transcription	Fetal Brain Male	brain
26	chr15:57612600-57616400	Enhancers	HUVEC	blood vessel
27	chr15:57612600-57617600	Enhancers	Stomach Mucosa	stomach
28	chr15:57612800-57613600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:57612800-57613600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:57612800-57613600	Enhancers	NHLF	lung
31	chr15:57612800-57613800	Enhancers	Primary B cells from peripheral blood	blood
32	chr15:57612800-57614200	Weak transcription	Fetal Heart	heart
33	chr15:57612800-57615600	Weak transcription	Lung	lung
34	chr15:57612800-57616400	Enhancers	Primary hematopoietic stem cells	blood
35	chr15:57612800-57619400	Weak transcription	Fetal Lung	lung
36	chr15:57613000-57613600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:57613000-57614200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr15:57613000-57614200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:57613000-57614400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr15:57613000-57614400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:57613000-57614600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr15:57613000-57614600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:57613000-57614800	Weak transcription	Fetal Stomach	stomach
44	chr15:57613000-57616200	Enhancers	Duodenum Mucosa	Duodenum
45	chr15:57613000-57616400	Enhancers	Thymus	Thymus
46	chr15:57613000-57626800	Weak transcription	Right Atrium	heart
47	chr15:57613000-57635400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:57613200-57614000	Enhancers	Adipose Nuclei	Adipose
49	chr15:57613200-57614200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr15:57613200-57614200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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