Variant report

Variant	rs73417552
Chromosome Location	chr15:44731744-44731745
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44719732..44721943-chr15:44731703..44735323,3	K562	blood:
2	chr15:44728934..44731532-chr15:44731569..44733789,3	K562	blood:

Variant related genes	Relation type
ENSG00000137770	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73417599	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv569299	chr15:44598642-44776075	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv569300	chr15:44609796-44763598	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44720400-44733000	Weak transcription	Gastric	stomach
2	chr15:44720400-44740000	Weak transcription	Esophagus	oesophagus
3	chr15:44720400-44740000	Weak transcription	Pancreas	Pancrea
4	chr15:44720600-44740000	Weak transcription	Aorta	Aorta
5	chr15:44720800-44733000	Weak transcription	Left Ventricle	heart
6	chr15:44720800-44754000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:44721000-44733000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:44721000-44733000	Weak transcription	Ovary	ovary
9	chr15:44721000-44733200	Weak transcription	Right Ventricle	heart
10	chr15:44721000-44828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:44721400-44733400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:44721600-44732800	Weak transcription	Adipose Nuclei	Adipose
13	chr15:44721600-44733000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:44721600-44750800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:44721600-44751200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:44721600-44753000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:44721800-44732800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr15:44721800-44734800	Weak transcription	Fetal Brain Female	brain
19	chr15:44721800-44735000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:44721800-44735200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:44721800-44735400	Weak transcription	Fetal Intestine Large	intestine
22	chr15:44721800-44739800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:44721800-44750600	Weak transcription	Fetal Lung	lung
24	chr15:44721800-44750800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr15:44721800-44751800	Weak transcription	Primary B cells from cord blood	blood
26	chr15:44722000-44732600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:44722000-44733400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:44722200-44733000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr15:44722200-44733000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:44722200-44739800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:44722600-44739800	Weak transcription	Thymus	Thymus
32	chr15:44722600-44751200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr15:44722800-44732800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:44722800-44732800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:44722800-44733400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr15:44722800-44760600	Weak transcription	Small Intestine	intestine
37	chr15:44724200-44733000	Weak transcription	Psoas Muscle	Psoas
38	chr15:44725200-44739800	Weak transcription	Lung	lung
39	chr15:44725400-44733400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:44725400-44735000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:44725600-44733000	Weak transcription	HepG2	liver
42	chr15:44725800-44756200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:44726200-44739800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr15:44726800-44733000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr15:44726800-44733200	Weak transcription	Liver	Liver
46	chr15:44726800-44739800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:44726800-44739800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr15:44726800-44740000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:44727000-44733000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:44727000-44740000	Weak transcription	Fetal Muscle Trunk	muscle

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