Variant report

Variant	rs73419093
Chromosome Location	chr15:60227653-60227654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12324897	1.00[AMR][1000 genomes]
rs2970385	1.00[AMR][1000 genomes]
rs74019947	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2760398	chr15:60208658-60243534	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1553	chr15:60209361-60234943	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60223200-60228600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:60224400-60230000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:60226200-60227800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:60226200-60232600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:60226400-60228600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:60226400-60228800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:60226400-60229000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:60226400-60229000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:60226600-60228400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:60227600-60228000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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