Variant report

Variant	rs2970385
Chromosome Location	chr15:60216466-60216467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10438336	1.00[EUR][1000 genomes]
rs10519031	1.00[EUR][1000 genomes]
rs12324046	1.00[EUR][1000 genomes]
rs12324897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2912104	1.00[EUR][1000 genomes]
rs2970377	1.00[EUR][1000 genomes]
rs4258553	1.00[EUR][1000 genomes]
rs56856389	1.00[EUR][1000 genomes]
rs7161850	1.00[EUR][1000 genomes]
rs73419027	1.00[EUR][1000 genomes]
rs73419030	1.00[EUR][1000 genomes]
rs73419080	1.00[EUR][1000 genomes]
rs73419093	1.00[AMR][1000 genomes]
rs74019947	1.00[AMR][1000 genomes]
rs8029377	1.00[EUR][1000 genomes]
rs8030322	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2760398	chr15:60208658-60243534	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1553	chr15:60209361-60234943	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60211600-60223000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:60215200-60217000	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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