Variant report

Variant	rs4258553
Chromosome Location	chr15:60188578-60188579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10438336	1.00[EUR][1000 genomes]
rs10519031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12324046	1.00[EUR][1000 genomes]
rs12324897	1.00[EUR][1000 genomes]
rs2912104	1.00[EUR][1000 genomes]
rs2970377	1.00[EUR][1000 genomes]
rs2970385	1.00[EUR][1000 genomes]
rs56856389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161850	1.00[EUR][1000 genomes]
rs73419027	1.00[EUR][1000 genomes]
rs73419030	1.00[EUR][1000 genomes]
rs73419080	1.00[EUR][1000 genomes]
rs8029377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60188200-60189200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr15:60188200-60189400	Enhancers	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links