Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10438336	1.00[EUR][1000 genomes]
rs10519031	1.00[EUR][1000 genomes]
rs12324897	1.00[EUR][1000 genomes]
rs16941692	1.00[AMR][1000 genomes]
rs16941773	1.00[AMR][1000 genomes]
rs16941786	1.00[AMR][1000 genomes]
rs16941800	1.00[AMR][1000 genomes]
rs2912104	1.00[EUR][1000 genomes]
rs2970377	1.00[EUR][1000 genomes]
rs2970385	1.00[EUR][1000 genomes]
rs4258553	1.00[EUR][1000 genomes]
rs56856389	1.00[EUR][1000 genomes]
rs58854426	1.00[AMR][1000 genomes]
rs7161850	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173788	1.00[AMR][1000 genomes]
rs73419027	1.00[EUR][1000 genomes]
rs73419030	1.00[EUR][1000 genomes]
rs73419080	1.00[EUR][1000 genomes]
rs8029377	1.00[EUR][1000 genomes]
rs8030322	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60167000-60170400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:60170000-60170800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:60170200-60170600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr15:60170200-60170800	Weak transcription	Fetal Brain Male	brain
5	chr15:60170200-60171000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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