Variant report

Variant	rs16941786
Chromosome Location	chr15:60105344-60105345
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12324046	1.00[AMR][1000 genomes]
rs16941692	1.00[AMR][1000 genomes]
rs16941773	1.00[AMR][1000 genomes]
rs16941800	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58234552	1.00[EUR][1000 genomes]
rs58854426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59340067	1.00[EUR][1000 genomes]
rs7161850	1.00[AMR][1000 genomes]
rs7171708	1.00[EUR][1000 genomes]
rs7173788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73433504	1.00[EUR][1000 genomes]
rs73433557	1.00[EUR][1000 genomes]
rs74018163	1.00[EUR][1000 genomes]
rs74018164	1.00[EUR][1000 genomes]
rs74019930	1.00[EUR][1000 genomes]
rs74019945	1.00[EUR][1000 genomes]
rs74019947	1.00[EUR][1000 genomes]
rs74019976	1.00[EUR][1000 genomes]
rs8023802	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60101800-60106000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:60103400-60109600	Enhancers	Fetal Thymus	thymus
3	chr15:60104000-60105800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:60104200-60105400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr15:60104200-60105600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:60104200-60106400	Flanking Active TSS	Thymus	Thymus
7	chr15:60104400-60105400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:60104400-60105600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr15:60104400-60105600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr15:60104400-60107600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:60104600-60105400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:60104600-60107400	Enhancers	Primary T cells from cord blood	blood
13	chr15:60104600-60107600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr15:60105200-60105400	Bivalent Enhancer	Fetal Heart	heart
15	chr15:60105200-60106400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr15:60105200-60107200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:60105200-60110000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:60105200-60110200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:60105200-60110400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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