Variant report

Variant	rs58854426
Chromosome Location	chr15:60107950-60107951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12324046	1.00[AMR][1000 genomes]
rs16941692	1.00[AMR][1000 genomes]
rs16941773	1.00[AMR][1000 genomes]
rs16941786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16941794	0.97[AFR][1000 genomes]
rs16941800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55895619	0.86[AFR][1000 genomes]
rs57544209	0.92[AFR][1000 genomes]
rs58234552	1.00[EUR][1000 genomes]
rs59340067	1.00[EUR][1000 genomes]
rs7161850	1.00[AMR][1000 genomes]
rs7163881	0.86[AFR][1000 genomes]
rs7164415	0.86[AFR][1000 genomes]
rs7164454	0.82[AFR][1000 genomes]
rs7164568	0.92[AFR][1000 genomes]
rs7165409	0.92[AFR][1000 genomes]
rs7173788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73433504	1.00[EUR][1000 genomes]
rs73433557	1.00[EUR][1000 genomes]
rs73433573	0.92[AFR][1000 genomes]
rs74018163	1.00[EUR][1000 genomes]
rs74018164	1.00[EUR][1000 genomes]
rs74019930	1.00[EUR][1000 genomes]
rs74019945	1.00[EUR][1000 genomes]
rs74019947	1.00[EUR][1000 genomes]
rs74019976	1.00[EUR][1000 genomes]
rs8023802	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60103400-60109600	Enhancers	Fetal Thymus	thymus
2	chr15:60105200-60110000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:60105200-60110200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:60105200-60110400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:60105400-60110600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:60105600-60110600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:60107400-60108200	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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