Variant report

Variant	rs73433573
Chromosome Location	chr15:60106870-60106871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16941700	0.80[EUR][1000 genomes]
rs16941794	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs55895619	0.80[AFR][1000 genomes]
rs57544209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58854426	0.92[AFR][1000 genomes]
rs7163881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164415	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164454	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036841	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60103400-60109600	Enhancers	Fetal Thymus	thymus
2	chr15:60104400-60107600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr15:60104600-60107400	Enhancers	Primary T cells from cord blood	blood
4	chr15:60104600-60107600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:60105200-60107200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:60105200-60110000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:60105200-60110200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:60105200-60110400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:60105400-60110600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:60105600-60110600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:60105800-60107600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:60106000-60107200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr15:60106000-60107600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:60106000-60107600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:60106000-60107600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:60106200-60107600	Enhancers	Dnd41	blood
17	chr15:60106200-60107800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr15:60106400-60107000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:60106400-60107400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:60106400-60107400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr15:60106600-60107000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:60106600-60107400	Enhancers	Primary hematopoietic stem cells	blood
23	chr15:60106800-60107000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr15:60106800-60107000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr15:60106800-60107200	Flanking Active TSS	Thymus	Thymus

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