Variant report

Variant	rs16941794
Chromosome Location	chr15:60107445-60107446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16941700	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941778	1.00[ASN][1000 genomes]
rs16941815	1.00[ASN][1000 genomes]
rs35653662	1.00[ASN][1000 genomes]
rs55895619	0.83[AFR][1000 genomes]
rs57544209	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57888850	1.00[ASN][1000 genomes]
rs58854426	0.97[AFR][1000 genomes]
rs7163881	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164415	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164454	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164568	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165409	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73433573	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs8036841	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60103400-60109600	Enhancers	Fetal Thymus	thymus
2	chr15:60104400-60107600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr15:60104600-60107600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr15:60105200-60110000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:60105200-60110200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:60105200-60110400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:60105400-60110600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:60105600-60110600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:60105800-60107600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:60106000-60107600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:60106000-60107600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr15:60106000-60107600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr15:60106200-60107600	Enhancers	Dnd41	blood
14	chr15:60106200-60107800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr15:60107000-60107800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr15:60107200-60107600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:60107400-60108200	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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