Variant report

Variant	rs16941815
Chromosome Location	chr15:60127097-60127098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16941700	1.00[ASN][1000 genomes]
rs16941778	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941794	1.00[ASN][1000 genomes]
rs35653662	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57544209	1.00[ASN][1000 genomes]
rs57888850	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59413393	0.90[EUR][1000 genomes]
rs7163881	1.00[ASN][1000 genomes]
rs7164415	1.00[ASN][1000 genomes]
rs7164454	1.00[ASN][1000 genomes]
rs7164568	1.00[ASN][1000 genomes]
rs7165409	1.00[ASN][1000 genomes]
rs8036841	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16941815	MMP7	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60123000-60127800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr15:60125600-60128800	Enhancers	Fetal Thymus	thymus
3	chr15:60125600-60130400	Enhancers	Thymus	Thymus
4	chr15:60126000-60133200	Enhancers	Primary T cells from cord blood	blood
5	chr15:60126800-60127800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:60127000-60127400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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