Variant report

Variant	rs57888850
Chromosome Location	chr15:60102336-60102337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16941700	1.00[ASN][1000 genomes]
rs16941778	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941794	1.00[ASN][1000 genomes]
rs16941815	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35653662	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57544209	1.00[ASN][1000 genomes]
rs59413393	0.97[EUR][1000 genomes]
rs7163881	1.00[ASN][1000 genomes]
rs7164415	1.00[ASN][1000 genomes]
rs7164454	1.00[ASN][1000 genomes]
rs7164568	1.00[ASN][1000 genomes]
rs7165409	1.00[ASN][1000 genomes]
rs74019947	0.93[AFR][1000 genomes]
rs8036841	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60101800-60106000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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