Variant report

Variant	rs16941778
Chromosome Location	chr15:60103910-60103911
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16941700	1.00[ASN][1000 genomes]
rs16941794	1.00[ASN][1000 genomes]
rs16941815	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35653662	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57544209	1.00[ASN][1000 genomes]
rs57888850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59413393	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7163881	1.00[ASN][1000 genomes]
rs7164415	1.00[ASN][1000 genomes]
rs7164454	1.00[ASN][1000 genomes]
rs7164568	1.00[ASN][1000 genomes]
rs7165409	1.00[ASN][1000 genomes]
rs8036841	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16941778	MMP7	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60101800-60106000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:60103000-60104200	Enhancers	Thymus	Thymus
3	chr15:60103400-60109600	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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