Variant report

Variant	rs74019930
Chromosome Location	chr15:60087461-60087462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16941786	1.00[EUR][1000 genomes]
rs16941800	1.00[EUR][1000 genomes]
rs58234552	1.00[EUR][1000 genomes]
rs58854426	1.00[EUR][1000 genomes]
rs59340067	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7171708	1.00[EUR][1000 genomes]
rs7173788	1.00[EUR][1000 genomes]
rs73433504	1.00[EUR][1000 genomes]
rs73433557	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74018163	1.00[EUR][1000 genomes]
rs74018164	1.00[EUR][1000 genomes]
rs74019945	1.00[EUR][1000 genomes]
rs74019947	1.00[EUR][1000 genomes]
rs74019976	1.00[EUR][1000 genomes]
rs8023802	1.00[EUR][1000 genomes]
rs8034635	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60083000-60091600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:60083200-60087600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr15:60085000-60088000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr15:60085000-60090600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr15:60085000-60095600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:60086800-60087600	Enhancers	Primary T cells from cord blood	blood
7	chr15:60086800-60090000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:60087000-60089200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:60087000-60090000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:60087000-60090000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:60087000-60090000	Weak transcription	Thymus	Thymus
12	chr15:60087200-60089200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:60087200-60089200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:60087200-60095400	Weak transcription	Fetal Thymus	thymus
15	chr15:60087400-60089200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:60087400-60090000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:60087400-60090000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links