Variant report

Variant	rs73419614
Chromosome Location	chr12:121476280-121476281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10083042	1.00[AMR][1000 genomes]
rs10083044	1.00[AMR][1000 genomes]
rs11065395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv899560	chr12:121371233-121560581	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv899561	chr12:121376416-121525591	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv899562	chr12:121376416-121565870	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	esv2758318	chr12:121415845-121584813	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	esv2759917	chr12:121415845-121584813	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv1039216	chr12:121421701-121538491	Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv832531	chr12:121440495-121604232	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv560454	chr12:121457073-121745742	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
11	esv3421024	chr12:121471004-121493702	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121454400-121476400	Weak transcription	Right Atrium	heart
2	chr12:121472200-121476400	Weak transcription	Esophagus	oesophagus
3	chr12:121473000-121476400	Weak transcription	Aorta	Aorta
4	chr12:121473000-121476600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:121473600-121476400	Weak transcription	Lung	lung
6	chr12:121473800-121476400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:121475000-121476400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:121475000-121476600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:121475200-121476400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:121475200-121476400	Weak transcription	HMEC	breast
11	chr12:121475200-121476400	Weak transcription	HSMM	muscle
12	chr12:121475400-121476400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:121475600-121477400	Flanking Active TSS	GM12878-XiMat	blood
14	chr12:121475800-121476400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr12:121475800-121476400	Enhancers	HepG2	liver
16	chr12:121475800-121476600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:121475800-121476600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr12:121475800-121477200	Active TSS	Stomach Mucosa	stomach
19	chr12:121476000-121476400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:121476000-121476400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr12:121476000-121476400	Active TSS	Primary T cells fromperipheralblood	blood
22	chr12:121476000-121476400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr12:121476000-121476400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr12:121476000-121476400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr12:121476000-121476400	Active TSS	Fetal Muscle Leg	muscle
26	chr12:121476000-121476400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
27	chr12:121476000-121476400	Enhancers	Spleen	Spleen
28	chr12:121476000-121476600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr12:121476000-121476600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr12:121476000-121476800	Flanking Active TSS	Liver	Liver
31	chr12:121476000-121476800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
32	chr12:121476000-121476800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr12:121476000-121477000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr12:121476000-121477000	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr12:121476000-121477400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr12:121476000-121477400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr12:121476000-121477400	Active TSS	Rectal Smooth Muscle	rectum
38	chr12:121476000-121477400	Flanking Active TSS	Hela-S3	cervix
39	chr12:121476200-121476400	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr12:121476200-121476400	Bivalent Enhancer	Brain Angular Gyrus	brain
41	chr12:121476200-121476400	Active TSS	Brain Anterior Caudate	brain
42	chr12:121476200-121476400	Active TSS	Brain Cingulate Gyrus	brain
43	chr12:121476200-121476400	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr12:121476200-121476400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:121476200-121476400	Active TSS	Brain Substantia Nigra	brain
46	chr12:121476200-121476400	Active TSS	Colonic Mucosa	Colon
47	chr12:121476200-121476400	Enhancers	Fetal Intestine Large	intestine
48	chr12:121476200-121476400	Enhancers	Fetal Intestine Small	intestine
49	chr12:121476200-121476400	Active TSS	Placenta	Placenta
50	chr12:121476200-121476400	Active TSS	Ovary	ovary

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