Variant report

Variant	rs73420368
Chromosome Location	chr12:124254088-124254089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:124248193..124250818-chr12:124252081..124254755,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1060638	1.00[ASN][1000 genomes]
rs11572914	1.00[ASN][1000 genomes]
rs11572916	1.00[ASN][1000 genomes]
rs11572919	1.00[ASN][1000 genomes]
rs11572921	1.00[ASN][1000 genomes]
rs11572928	1.00[ASN][1000 genomes]
rs11572929	1.00[ASN][1000 genomes]
rs11572931	1.00[ASN][1000 genomes]
rs11572961	1.00[ASN][1000 genomes]
rs11572965	1.00[ASN][1000 genomes]
rs11572970	1.00[ASN][1000 genomes]
rs11572992	1.00[ASN][1000 genomes]
rs11573002	1.00[ASN][1000 genomes]
rs11573003	1.00[ASN][1000 genomes]
rs11573005	1.00[ASN][1000 genomes]
rs11831129	1.00[ASN][1000 genomes]
rs1568031	1.00[ASN][1000 genomes]
rs1913847	1.00[ASN][1000 genomes]
rs56816130	1.00[ASN][1000 genomes]
rs57071951	1.00[ASN][1000 genomes]
rs58028686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58507743	1.00[ASN][1000 genomes]
rs58680194	1.00[ASN][1000 genomes]
rs58831452	1.00[ASN][1000 genomes]
rs58904890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59279556	1.00[ASN][1000 genomes]
rs59827616	1.00[ASN][1000 genomes]
rs60422010	1.00[ASN][1000 genomes]
rs60577371	1.00[ASN][1000 genomes]
rs61082817	1.00[ASN][1000 genomes]
rs6488885	1.00[ASN][1000 genomes]
rs6488889	1.00[ASN][1000 genomes]
rs7134190	1.00[ASN][1000 genomes]
rs73414295	1.00[ASN][1000 genomes]
rs73416203	1.00[ASN][1000 genomes]
rs73416204	1.00[ASN][1000 genomes]
rs73416211	1.00[ASN][1000 genomes]
rs73416216	1.00[ASN][1000 genomes]
rs73416277	1.00[ASN][1000 genomes]
rs73416283	1.00[ASN][1000 genomes]
rs73416288	1.00[ASN][1000 genomes]
rs73416298	1.00[ASN][1000 genomes]
rs73416299	1.00[ASN][1000 genomes]
rs73416301	1.00[ASN][1000 genomes]
rs73418103	1.00[ASN][1000 genomes]
rs73418104	1.00[ASN][1000 genomes]
rs73418114	1.00[ASN][1000 genomes]
rs73418125	1.00[ASN][1000 genomes]
rs73418139	1.00[ASN][1000 genomes]
rs73418148	1.00[ASN][1000 genomes]
rs73418153	1.00[ASN][1000 genomes]
rs73418159	1.00[ASN][1000 genomes]
rs73418167	1.00[ASN][1000 genomes]
rs73418174	1.00[ASN][1000 genomes]
rs73418179	1.00[ASN][1000 genomes]
rs73418191	1.00[ASN][1000 genomes]
rs73420303	1.00[ASN][1000 genomes]
rs73420351	1.00[ASN][1000 genomes]
rs73420355	1.00[ASN][1000 genomes]
rs73420358	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124244800-124254800	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links