Variant report

Variant	rs73420919
Chromosome Location	chr12:120874620-120874621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120728080..120732301-chr12:120874297..120877936,6	K562	blood:
2	chr12:120873907..120875736-chr12:120904532..120906530,2	MCF-7	breast:
3	chr12:120638719..120641136-chr12:120874234..120877493,3	K562	blood:
4	chr12:120874293..120875832-chr12:120907401..120908923,2	K562	blood:
5	chr12:120727155..120732265-chr12:120871900..120878042,6	MCF-7	breast:
6	chr12:120798208..120800958-chr12:120872318..120875660,3	MCF-7	breast:
7	chr12:120728477..120731826-chr12:120874371..120876435,3	K562	blood:
8	chr12:120874293..120878054-chr12:120905643..120908923,7	K562	blood:
9	chr12:120638809..120640383-chr12:120873951..120876140,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000089157	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000255857	Chromatin interaction
ENSG00000135097	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000088986	Chromatin interaction
ENSG00000111786	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11612825	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12313457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12315712	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73420911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7961895	0.81[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120852400-120875200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:120867200-120875200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:120867600-120875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:120869200-120875200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr12:120871000-120875200	Weak transcription	Hela-S3	cervix
7	chr12:120871200-120875200	Weak transcription	K562	blood
8	chr12:120872200-120875000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr12:120872400-120875200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:120873000-120875000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:120873000-120875200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr12:120873000-120875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:120874000-120875200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr12:120874000-120875200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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