Variant report

Variant	rs7961895
Chromosome Location	chr12:120895662-120895663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120894070..120896271-chr12:120902567..120904195,2	MCF-7	breast:
2	chr12:120729376..120731044-chr12:120893599..120896434,2	K562	blood:
3	chr12:120894801..120896832-chr12:120900607..120902476,3	MCF-7	breast:
4	chr12:120889513..120892526-chr12:120894358..120898102,4	MCF-7	breast:
5	chr12:120881786..120887915-chr12:120889674..120896423,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200795	Chromatin interaction
ENSG00000111786	Chromatin interaction
ENSG00000257218	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000170855	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11065140	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11065142	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11548262	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11608807	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11609119	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11611781	0.90[ASN][1000 genomes]
rs11611814	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11612519	0.88[ASN][1000 genomes]
rs11612825	0.81[EUR][1000 genomes]
rs11613214	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11614224	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11615264	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11615719	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11829765	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12313457	0.81[EUR][1000 genomes]
rs12315712	0.81[EUR][1000 genomes]
rs16950293	0.88[ASN][1000 genomes]
rs16950305	0.84[ASN][1000 genomes]
rs2280168	0.90[ASN][1000 genomes]
rs35696148	0.83[ASN][1000 genomes]
rs3742049	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3759402	0.90[ASN][1000 genomes]
rs3817301	0.88[ASN][1000 genomes]
rs3829291	0.88[ASN][1000 genomes]
rs4102203	0.90[EUR][1000 genomes]
rs4439575	0.88[ASN][1000 genomes]
rs57646360	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59088579	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59201986	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60162888	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6490292	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66840048	0.86[ASN][1000 genomes]
rs7027	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7134710	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs719449	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs719450	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7296473	0.88[ASN][1000 genomes]
rs7297861	0.88[ASN][1000 genomes]
rs7299954	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7314103	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403923	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403943	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73403947	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73403968	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73403975	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73405628	0.88[ASN][1000 genomes]
rs73420911	0.81[EUR][1000 genomes]
rs73420919	0.81[EUR][1000 genomes]
rs7957424	0.80[AFR][1000 genomes]
rs7962410	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7964008	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7973555	0.90[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120885400-120904400	Strong transcription	Fetal Muscle Trunk	muscle
2	chr12:120885400-120906000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:120885400-120906000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:120885600-120896400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:120885600-120904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:120885600-120904000	Strong transcription	Fetal Stomach	stomach
7	chr12:120885800-120897800	Weak transcription	Fetal Heart	heart
8	chr12:120885800-120904200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:120885800-120904400	Strong transcription	Fetal Muscle Leg	muscle
10	chr12:120885800-120904400	Weak transcription	Right Atrium	heart
11	chr12:120885800-120904600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:120885800-120904600	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:120886000-120897000	Weak transcription	Fetal Brain Male	brain
14	chr12:120886000-120904200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:120886200-120904800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:120886400-120897800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr12:120886600-120904200	Strong transcription	Fetal Thymus	thymus
18	chr12:120887000-120903400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:120887000-120904000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:120887000-120904000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:120887000-120904000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:120887000-120905000	Strong transcription	Thymus	Thymus
23	chr12:120887000-120905600	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr12:120887200-120903200	Strong transcription	Dnd41	blood
25	chr12:120887200-120903400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:120887200-120904600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr12:120888000-120904000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr12:120888600-120896800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr12:120888600-120905800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr12:120889600-120904400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr12:120889800-120904600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr12:120890000-120903400	Strong transcription	A549	lung
33	chr12:120890000-120903600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr12:120890200-120904000	Strong transcription	Primary hematopoietic stem cells	blood
35	chr12:120890200-120904000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr12:120890200-120904400	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr12:120890400-120903400	Strong transcription	Fetal Lung	lung
38	chr12:120890400-120905800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr12:120890600-120905400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr12:120891000-120905800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr12:120891200-120904400	Strong transcription	K562	blood
42	chr12:120891200-120905600	Strong transcription	Placenta	Placenta
43	chr12:120891200-120905800	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr12:120891400-120903600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr12:120891400-120904000	Strong transcription	Duodenum Mucosa	Duodenum
46	chr12:120891600-120897600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr12:120891600-120903600	Strong transcription	Liver	Liver
48	chr12:120891600-120904600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr12:120891600-120905200	Strong transcription	Fetal Intestine Large	intestine
50	chr12:120892200-120902800	Strong transcription	Spleen	Spleen

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