Variant report

Variant	rs11613214
Chromosome Location	chr12:120915220-120915221
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120914291..120915832-chr12:120925893..120928609,2	K562	blood:
2	chr12:120903414..120909393-chr12:120910653..120915482,19	MCF-7	breast:
3	chr12:120903651..120915747-chr12:120930491..120936868,24	K562	blood:
4	chr12:120914040..120916890-chr12:120934430..120937832,4	K562	blood:
5	chr12:120911190..120915382-chr12:120965465..120968340,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110871	Chromatin interaction
ENSG00000088986	Chromatin interaction
ENSG00000111786	Chromatin interaction
ENSG00000248008	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10789	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11065140	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11065142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11548262	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11608416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11608807	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11609119	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11611781	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11611814	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11612519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11614224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11615264	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11615719	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11829765	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16950293	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16950305	1.00[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2280168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35696148	0.81[ASN][1000 genomes]
rs3742049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3759402	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3817301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3829291	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4102203	1.00[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs4439575	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57646360	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59088579	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59201986	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60162888	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6490292	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66840048	0.84[ASN][1000 genomes]
rs7027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7134710	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs719449	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs719450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7296473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7297861	0.86[ASN][1000 genomes]
rs7299954	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7314103	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73403923	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73403943	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403947	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403968	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73403975	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73405628	0.86[ASN][1000 genomes]
rs7957424	0.96[YRI][hapmap]
rs7961895	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7962410	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7964008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7973555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7979366	0.83[YRI][hapmap]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120908200-120933200	Weak transcription	Aorta	Aorta
2	chr12:120908400-120917400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:120908400-120919400	Weak transcription	Right Ventricle	heart
4	chr12:120908400-120919800	Weak transcription	Fetal Intestine Large	intestine
5	chr12:120908400-120925800	Weak transcription	Fetal Intestine Small	intestine
6	chr12:120908400-120926000	Weak transcription	HSMMtube	muscle
7	chr12:120908400-120928800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr12:120908400-120929000	Weak transcription	Psoas Muscle	Psoas
9	chr12:120908400-120932400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:120908400-120932400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:120908600-120917400	Weak transcription	Fetal Muscle Leg	muscle
12	chr12:120908600-120925400	Weak transcription	Pancreas	Pancrea
13	chr12:120908600-120927200	Weak transcription	Fetal Brain Female	brain
14	chr12:120908600-120928200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:120908600-120928600	Weak transcription	Spleen	Spleen
16	chr12:120908600-120928800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:120908600-120932800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr12:120908600-120932800	Weak transcription	Adipose Nuclei	Adipose
19	chr12:120908600-120932800	Weak transcription	Brain Germinal Matrix	brain
20	chr12:120908600-120932800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr12:120908600-120933000	Weak transcription	Thymus	Thymus
22	chr12:120908800-120917400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:120908800-120926000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr12:120908800-120928400	Weak transcription	Primary T cells from cord blood	blood
25	chr12:120909200-120919400	Weak transcription	Fetal Stomach	stomach
26	chr12:120909200-120919600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr12:120910600-120917400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr12:120911000-120917400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr12:120911000-120932800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr12:120912000-120928600	Weak transcription	Esophagus	oesophagus
31	chr12:120912200-120917400	Weak transcription	Brain Angular Gyrus	brain
32	chr12:120912600-120916800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:120912600-120917400	Weak transcription	Brain Substantia Nigra	brain
34	chr12:120912600-120929200	Weak transcription	Fetal Thymus	thymus
35	chr12:120912800-120917400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr12:120912800-120917400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:120912800-120917400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr12:120912800-120917400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr12:120912800-120917400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr12:120912800-120917600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr12:120912800-120926000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr12:120912800-120928800	Weak transcription	Placenta	Placenta
43	chr12:120912800-120932600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr12:120913000-120917400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr12:120913000-120918000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr12:120913000-120919400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr12:120913000-120919400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr12:120913000-120927800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr12:120913000-120928600	Weak transcription	NHDF-Ad	bronchial
50	chr12:120913000-120932600	Weak transcription	NH-A	brain

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