Variant report

Variant	rs7297861
Chromosome Location	chr12:121026828-121026829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs11065140	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[ASN][1000 genomes]
rs11065142	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[ASN][1000 genomes]
rs11548262	0.88[ASN][1000 genomes]
rs11608416	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11608807	0.93[ASN][1000 genomes]
rs11611781	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11611814	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612519	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613214	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs11614224	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11615264	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615719	0.88[ASN][1000 genomes]
rs11829765	0.93[ASN][1000 genomes]
rs16950293	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950305	0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs2280168	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35696148	0.81[ASN][1000 genomes]
rs3742049	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3759402	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3817301	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3829291	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4102203	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs4439575	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57646360	0.85[ASN][1000 genomes]
rs59088579	0.95[ASN][1000 genomes]
rs59201986	0.88[ASN][1000 genomes]
rs60162888	0.95[ASN][1000 genomes]
rs6490292	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs66840048	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7027	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs719449	0.95[ASN][1000 genomes]
rs719450	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7296473	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7299954	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7314103	0.88[ASN][1000 genomes]
rs73403923	0.88[ASN][1000 genomes]
rs73403943	0.95[ASN][1000 genomes]
rs73403947	0.95[ASN][1000 genomes]
rs73403968	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73403975	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73405628	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957424	0.81[YRI][hapmap]
rs7961895	0.88[ASN][1000 genomes]
rs7962410	0.93[ASN][1000 genomes]
rs7964008	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[ASN][1000 genomes]
rs7973555	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7979366	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv973944	chr12:121017088-121027122	Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121019600-121027200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121022800-121027000	Weak transcription	Brain Anterior Caudate	brain
3	chr12:121022800-121028800	Weak transcription	Esophagus	oesophagus
4	chr12:121023000-121027000	Weak transcription	Colonic Mucosa	Colon
5	chr12:121023000-121027400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr12:121026200-121027400	Enhancers	Fetal Heart	heart
7	chr12:121026200-121027600	Enhancers	Fetal Muscle Leg	muscle
8	chr12:121026400-121027600	Enhancers	Fetal Muscle Trunk	muscle
9	chr12:121026600-121027400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr12:121026600-121027600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:121026600-121027600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr12:121026600-121027600	Enhancers	Left Ventricle	heart
13	chr12:121026600-121027600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr12:121026800-121027000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:121026800-121027400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr12:121026800-121027400	Enhancers	Psoas Muscle	Psoas
17	chr12:121026800-121027400	Enhancers	Right Ventricle	heart
18	chr12:121026800-121027600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links