Variant report

Variant	rs60162888
Chromosome Location	chr12:120946522-120946523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120933828..120935998-chr12:120945788..120947928,2	MCF-7	breast:
2	chr12:120932818..120934979-chr12:120946280..120948888,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248008	Chromatin interaction
ENSG00000088986	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11065140	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11065142	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11548262	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11608807	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11609119	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11611781	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11611814	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11612519	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11613214	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11614224	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11615264	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11615719	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11829765	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16950293	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16950305	0.90[ASN][1000 genomes]
rs2280168	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35696148	0.85[ASN][1000 genomes]
rs3742049	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3759402	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3817301	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3829291	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4102203	0.96[EUR][1000 genomes]
rs4439575	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57646360	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59088579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59201986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6490292	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66840048	0.93[ASN][1000 genomes]
rs7027	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7134710	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs719449	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719450	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296473	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7297861	0.95[ASN][1000 genomes]
rs7299954	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7314103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73403923	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73403943	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403968	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73403975	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73405628	0.95[ASN][1000 genomes]
rs7961895	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7962410	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7964008	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7973555	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120935200-120951400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:120935200-120966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:120935600-120966200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr12:120935800-120947000	Weak transcription	Aorta	Aorta
5	chr12:120935800-120951800	Weak transcription	Esophagus	oesophagus
6	chr12:120935800-120953400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr12:120936000-120947000	Weak transcription	Colonic Mucosa	Colon
8	chr12:120936000-120947200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr12:120936000-120955200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:120936000-120964200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr12:120936400-120963800	Weak transcription	Hela-S3	cervix
12	chr12:120936400-120966000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:120936400-120966200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr12:120936600-120949600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr12:120936600-120954800	Strong transcription	Adipose Nuclei	Adipose
16	chr12:120936800-120956600	Weak transcription	Stomach Mucosa	stomach
17	chr12:120937000-120951800	Weak transcription	NH-A	brain
18	chr12:120937200-120966000	Weak transcription	Psoas Muscle	Psoas
19	chr12:120937600-120963600	Strong transcription	Fetal Intestine Small	intestine
20	chr12:120938000-120953200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:120939000-120946800	Weak transcription	NHDF-Ad	bronchial
22	chr12:120939800-120951800	Weak transcription	Fetal Brain Male	brain
23	chr12:120940400-120948800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr12:120940600-120957400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr12:120941000-120950600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:120941800-120964000	Weak transcription	HUVEC	blood vessel
27	chr12:120942000-120946600	Weak transcription	Spleen	Spleen
28	chr12:120942000-120951800	Weak transcription	NHLF	lung
29	chr12:120942000-120962600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr12:120942400-120959800	Weak transcription	Fetal Kidney	kidney
31	chr12:120942800-120949200	Weak transcription	Primary B cells from cord blood	blood
32	chr12:120942800-120966200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:120943000-120946600	Weak transcription	Gastric	stomach
34	chr12:120943000-120946800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr12:120943000-120946800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr12:120943000-120947400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr12:120943000-120947600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr12:120943000-120947800	Weak transcription	HSMM	muscle
39	chr12:120943000-120954800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:120943000-120958400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr12:120943000-120963800	Weak transcription	K562	blood
42	chr12:120943000-120966200	Weak transcription	Fetal Heart	heart
43	chr12:120943200-120951800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr12:120943200-120953000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr12:120944200-120947800	Weak transcription	GM12878-XiMat	blood
46	chr12:120944400-120947000	Weak transcription	Right Ventricle	heart
47	chr12:120945400-120949600	Strong transcription	Lung	lung
48	chr12:120945400-120950200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr12:120945600-120948200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr12:120945600-120949000	Strong transcription	Primary T cells fromperipheralblood	blood

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