Variant report

Variant	rs57646360
Chromosome Location	chr12:120886221-120886222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:120885698-120886384	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:120793461..120795672-chr12:120885459..120888089,2	K562	blood:
2	chr12:120728284..120732232-chr12:120880260..120886911,13	MCF-7	breast:
3	chr12:120728333..120729932-chr12:120886056..120888165,2	K562	blood:
4	chr12:120886085..120888249-chr12:120933433..120935397,2	K562	blood:
5	chr12:120728080..120732034-chr12:120882797..120888425,5	K562	blood:
6	chr12:120884534..120886315-chr12:120897989..120899964,2	K562	blood:
7	chr12:120884552..120886751-chr12:120886858..120889507,3	MCF-7	breast:
8	chr12:120729043..120731764-chr12:120885263..120888215,2	MCF-7	breast:
9	chr12:120880802..120886804-chr12:120903895..120909908,12	K562	blood:

No data

Variant related genes	Relation type
TRIAP1	TF binding region
ENSG00000088986	Chromatin interaction
ENSG00000219355	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000248008	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000111786	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11065140	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11065142	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11548262	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11608807	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11609119	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11611781	0.83[ASN][1000 genomes]
rs11611814	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11612519	0.85[ASN][1000 genomes]
rs11613214	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11614224	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11615264	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11615719	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11829765	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16950293	0.85[ASN][1000 genomes]
rs16950305	0.81[ASN][1000 genomes]
rs2280168	0.83[ASN][1000 genomes]
rs3742049	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3759402	0.83[ASN][1000 genomes]
rs3817301	0.85[ASN][1000 genomes]
rs3829291	0.85[ASN][1000 genomes]
rs4102203	0.94[EUR][1000 genomes]
rs4439575	0.85[ASN][1000 genomes]
rs59088579	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59201986	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60162888	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6490292	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66840048	0.83[ASN][1000 genomes]
rs7027	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7134710	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs719449	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs719450	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7296473	0.85[ASN][1000 genomes]
rs7297861	0.85[ASN][1000 genomes]
rs7299954	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7314103	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73403923	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73403943	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403947	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403968	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73403975	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73405628	0.85[ASN][1000 genomes]
rs7961895	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7962410	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7964008	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7973555	0.83[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120884800-120893000	Weak transcription	Aorta	Aorta
2	chr12:120884800-120893200	Weak transcription	Small Intestine	intestine
3	chr12:120885000-120886400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:120885000-120887400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr12:120885000-120893800	Weak transcription	Ovary	ovary
6	chr12:120885400-120886400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr12:120885400-120886600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:120885400-120887000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:120885400-120887000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:120885400-120887000	Weak transcription	Gastric	stomach
11	chr12:120885400-120887000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:120885400-120887000	Weak transcription	Thymus	Thymus
13	chr12:120885400-120887800	Weak transcription	Fetal Kidney	kidney
14	chr12:120885400-120892200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:120885400-120892200	Weak transcription	Left Ventricle	heart
16	chr12:120885400-120892600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr12:120885400-120893200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr12:120885400-120893200	Weak transcription	Colonic Mucosa	Colon
19	chr12:120885400-120893800	Weak transcription	Esophagus	oesophagus
20	chr12:120885400-120893800	Weak transcription	Lung	lung
21	chr12:120885400-120894000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:120885400-120895600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr12:120885400-120904400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr12:120885400-120906000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr12:120885400-120906000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr12:120885600-120887000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr12:120885600-120887000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:120885600-120887000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr12:120885600-120887000	Weak transcription	NH-A	brain
30	chr12:120885600-120887200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr12:120885600-120888000	Weak transcription	Osteobl	bone
32	chr12:120885600-120890000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr12:120885600-120890000	Weak transcription	HMEC	breast
34	chr12:120885600-120890400	Weak transcription	Fetal Lung	lung
35	chr12:120885600-120892600	Weak transcription	Adipose Nuclei	Adipose
36	chr12:120885600-120893800	Weak transcription	HSMMtube	muscle
37	chr12:120885600-120894000	Weak transcription	Brain Anterior Caudate	brain
38	chr12:120885600-120894400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr12:120885600-120896400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr12:120885600-120904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr12:120885600-120904000	Strong transcription	Fetal Stomach	stomach
42	chr12:120885800-120886400	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr12:120885800-120886800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr12:120885800-120886800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr12:120885800-120886800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr12:120885800-120886800	Weak transcription	Placenta	Placenta
47	chr12:120885800-120887000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr12:120885800-120887000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr12:120885800-120887000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr12:120885800-120887000	Weak transcription	Spleen	Spleen

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