Variant report

Variant	rs11609119
Chromosome Location	chr12:120877821-120877822
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:120807836..120809663-chr12:120875850..120878030,2	MCF-7	breast:
2	chr12:120728080..120732301-chr12:120874297..120877936,6	K562	blood:
3	chr12:120875699..120878976-chr12:120901336..120905207,3	MCF-7	breast:
4	chr12:120727155..120732265-chr12:120871900..120878042,6	MCF-7	breast:
5	chr12:120877548..120880154-chr12:120905733..120907532,2	MCF-7	breast:
6	chr12:120877114..120878056-chr12:120907325..120908023,2	K562	blood:
7	chr12:120875946..120878903-chr12:121123173..121125911,2	K562	blood:
8	chr12:120877503..120880070-chr12:120902368..120904130,3	K562	blood:
9	chr12:120874293..120878054-chr12:120905643..120908923,7	K562	blood:
10	chr12:120875699..120878054-chr12:120933967..120936016,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000111786	Chromatin interaction
ENSG00000239881	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000110917	Chromatin interaction
ENSG00000088986	Chromatin interaction
ENSG00000200795	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11065140	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11065142	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11548262	0.97[EUR][1000 genomes]
rs11608807	0.92[EUR][1000 genomes]
rs11611814	0.94[EUR][1000 genomes]
rs11613214	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11614224	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11615264	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11615719	0.97[EUR][1000 genomes]
rs11829765	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35696148	0.85[ASN][1000 genomes]
rs3742049	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4102203	0.94[EUR][1000 genomes]
rs57646360	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59088579	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59201986	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60162888	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6490292	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7027	0.91[EUR][1000 genomes]
rs7134710	1.00[EUR][1000 genomes]
rs719449	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs719450	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7299954	0.90[EUR][1000 genomes]
rs7314103	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73403923	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73403943	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73403947	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73403968	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73403975	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7961895	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7962410	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7964008	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120875200-120878000	Active TSS	Right Atrium	heart
2	chr12:120876400-120878000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr12:120876400-120878000	Enhancers	Spleen	Spleen
4	chr12:120876400-120883400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:120876600-120878400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:120876600-120878600	Weak transcription	Ovary	ovary
7	chr12:120876800-120878000	Genic enhancers	Primary T cells fromperipheralblood	blood
8	chr12:120876800-120878000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:120876800-120878000	Enhancers	Fetal Brain Male	brain
10	chr12:120876800-120878000	Genic enhancers	Fetal Muscle Leg	muscle
11	chr12:120876800-120878000	Transcr. at gene 5' and 3'	K562	blood
12	chr12:120876800-120878200	Enhancers	Primary B cells from cord blood	blood
13	chr12:120876800-120878200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr12:120876800-120878600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr12:120876800-120881800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:120876800-120883400	Weak transcription	Esophagus	oesophagus
17	chr12:120877000-120878000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:120877000-120878000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr12:120877000-120878000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr12:120877000-120878000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr12:120877000-120878000	Enhancers	Liver	Liver
22	chr12:120877000-120878000	Enhancers	Brain Substantia Nigra	brain
23	chr12:120877000-120878000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr12:120877000-120878000	Enhancers	Small Intestine	intestine
25	chr12:120877000-120878000	Enhancers	NH-A	brain
26	chr12:120877000-120878000	Genic enhancers	Osteobl	bone
27	chr12:120877000-120878200	Enhancers	Primary hematopoietic stem cells	blood
28	chr12:120877000-120878200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr12:120877000-120878200	Enhancers	Brain Angular Gyrus	brain
30	chr12:120877000-120878200	Genic enhancers	Brain Hippocampus Middle	brain
31	chr12:120877000-120878200	Enhancers	Fetal Heart	heart
32	chr12:120877000-120878200	Genic enhancers	Fetal Intestine Small	intestine
33	chr12:120877000-120878600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr12:120877000-120880400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr12:120877000-120880600	Weak transcription	Aorta	Aorta
36	chr12:120877000-120881200	Weak transcription	Psoas Muscle	Psoas
37	chr12:120877000-120883000	Weak transcription	Pancreas	Pancrea
38	chr12:120877000-120883200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr12:120877200-120878000	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr12:120877200-120878000	Genic enhancers	Muscle Satellite Cultured Cells	--
41	chr12:120877200-120878000	Weak transcription	Adipose Nuclei	Adipose
42	chr12:120877200-120878000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr12:120877200-120878000	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr12:120877200-120878200	Genic enhancers	Fetal Intestine Large	intestine
45	chr12:120877200-120878200	Genic enhancers	Dnd41	blood
46	chr12:120877200-120878600	Weak transcription	Lung	lung
47	chr12:120877200-120881000	Weak transcription	Gastric	stomach
48	chr12:120877200-120882000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr12:120877200-120882000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr12:120877200-120883000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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