Variant report

Variant	rs7342145
Chromosome Location	chr11:46688539-46688540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46678596..46681633-chr11:46687108..46691156,3	K562	blood:
2	chr11:46687606..46689855-chr11:46719361..46722282,2	K562	blood:

Variant related genes	Relation type
ENSG00000175224	Chromatin interaction
ENSG00000175220	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3136430	0.82[ASW][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3136484	0.86[AFR][1000 genomes]
rs3136501	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3136503	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3136509	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55762640	0.83[AFR][1000 genomes]
rs56816820	1.00[AMR][1000 genomes]
rs7110413	0.86[AFR][1000 genomes]
rs7117944	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7938644	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7946801	0.82[ASW][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46643600-46690800	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:46652200-46695600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:46656600-46691200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr11:46659600-46695200	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr11:46664000-46690600	Strong transcription	Primary T cells from cord blood	blood
6	chr11:46664200-46689600	Strong transcription	Dnd41	blood
7	chr11:46664200-46692600	Strong transcription	Duodenum Mucosa	Duodenum
8	chr11:46664200-46695400	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:46664400-46691000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:46664400-46691400	Strong transcription	Fetal Thymus	thymus
11	chr11:46665600-46691000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:46665800-46688600	Strong transcription	Fetal Muscle Leg	muscle
13	chr11:46665800-46690600	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:46665800-46695200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:46666000-46691000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:46666000-46695400	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:46667000-46690800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:46667000-46691000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:46667000-46691600	Strong transcription	Thymus	Thymus
20	chr11:46667200-46695400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:46667200-46695600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:46667200-46717000	Strong transcription	Brain Germinal Matrix	brain
23	chr11:46667400-46696000	Strong transcription	Fetal Brain Female	brain
24	chr11:46670600-46691000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr11:46670600-46695600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:46671400-46696000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:46671400-46696000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:46671600-46688600	Strong transcription	Fetal Stomach	stomach
29	chr11:46674000-46689600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:46677200-46691600	Strong transcription	Primary B cells from cord blood	blood
31	chr11:46677400-46695800	Strong transcription	Rectal Smooth Muscle	rectum
32	chr11:46678400-46694000	Weak transcription	Stomach Mucosa	stomach
33	chr11:46679400-46695200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:46679400-46695800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:46680000-46692200	Strong transcription	Placenta	Placenta
36	chr11:46680400-46695000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:46680800-46689800	Genic enhancers	Brain Hippocampus Middle	brain
38	chr11:46681400-46689800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:46681400-46695000	Strong transcription	Liver	Liver
40	chr11:46681600-46689800	Weak transcription	Psoas Muscle	Psoas
41	chr11:46681600-46690400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:46681800-46690400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:46681800-46695000	Strong transcription	Fetal Intestine Small	intestine
44	chr11:46682000-46691200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr11:46682000-46691200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr11:46682000-46691600	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:46682000-46695200	Strong transcription	Fetal Intestine Large	intestine
48	chr11:46682800-46695600	Strong transcription	Hela-S3	cervix
49	chr11:46683200-46689400	Genic enhancers	Brain Inferior Temporal Lobe	brain
50	chr11:46683400-46688800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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