Variant report

Variant	rs7110413
Chromosome Location	chr11:46585066-46585067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46583747..46586201-chr11:46614784..46617261,2	K562	blood:
2	chr11:46584966..46589742-chr11:46590333..46593915,5	K562	blood:
3	chr11:46579404..46581958-chr11:46584451..46587343,2	MCF-7	breast:
4	chr11:46584966..46587736-chr11:46591083..46593688,3	K562	blood:

Variant related genes	Relation type
ENSG00000110497	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55762640	1.00[AMR][1000 genomes]
rs56692163	1.00[AMR][1000 genomes]
rs56851661	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58031860	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59379166	1.00[AMR][1000 genomes]
rs61183349	1.00[AMR][1000 genomes]
rs7117944	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121799	1.00[AMR][1000 genomes]
rs7342145	0.86[AFR][1000 genomes]
rs736633	1.00[AMR][1000 genomes]
rs7938644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946071	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946801	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1046990	chr11:46501436-46669636	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv541031	chr11:46501436-46669636	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897321	chr11:46515902-46673344	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46568800-46611000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:46568800-46612600	Weak transcription	Brain Germinal Matrix	brain
3	chr11:46578000-46606200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:46578200-46591400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:46579600-46586400	Weak transcription	Esophagus	oesophagus
6	chr11:46579600-46596600	Weak transcription	Lung	lung
7	chr11:46579800-46596000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:46579800-46606600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:46582200-46593600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:46582400-46586600	Weak transcription	Fetal Intestine Small	intestine
11	chr11:46582400-46589000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:46582400-46589400	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:46582600-46585800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:46582600-46585800	Weak transcription	Fetal Kidney	kidney
15	chr11:46582600-46586600	Weak transcription	Ovary	ovary
16	chr11:46582600-46587000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:46582600-46591200	Weak transcription	Aorta	Aorta
18	chr11:46582600-46592000	Weak transcription	Brain Angular Gyrus	brain
19	chr11:46582800-46587000	Weak transcription	Left Ventricle	heart
20	chr11:46583000-46593000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:46583000-46609600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:46583000-46613000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:46583200-46585800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:46583200-46586400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:46583200-46587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:46583200-46587200	Weak transcription	Brain Anterior Caudate	brain
27	chr11:46583200-46589000	Weak transcription	Fetal Stomach	stomach
28	chr11:46583200-46603800	Weak transcription	Right Atrium	heart
29	chr11:46583200-46606200	Weak transcription	K562	blood
30	chr11:46583200-46611800	Weak transcription	Thymus	Thymus
31	chr11:46583200-46612200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:46583200-46613800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:46583400-46585800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:46583400-46585800	Weak transcription	HUVEC	blood vessel
35	chr11:46583400-46585800	Weak transcription	Osteobl	bone
36	chr11:46583400-46586000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:46583400-46586000	Weak transcription	NH-A	brain
38	chr11:46583400-46586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:46583400-46586600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:46583400-46587000	Weak transcription	Stomach Mucosa	stomach
41	chr11:46583400-46596200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr11:46583400-46597800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:46583400-46608400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr11:46583600-46585800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:46583600-46585800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr11:46583600-46585800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:46583600-46585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:46583600-46587000	Weak transcription	NHLF	lung
49	chr11:46583600-46592200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr11:46583600-46612400	Weak transcription	Primary B cells from cord blood	blood

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