Variant report

Variant	rs56851661
Chromosome Location	chr11:46504312-46504313
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46495938..46498371-chr11:46504145..46507143,2	MCF-7	breast:
2	chr11:46503497..46505535-chr11:46508145..46510942,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2891617	1.00[AMR][1000 genomes]
rs55762640	1.00[AMR][1000 genomes]
rs56692163	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58031860	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59379166	1.00[AMR][1000 genomes]
rs61183349	1.00[AMR][1000 genomes]
rs7110413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7117944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs736633	1.00[AMR][1000 genomes]
rs7932067	1.00[AMR][1000 genomes]
rs7938644	1.00[AMR][1000 genomes]
rs7946071	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946801	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1046990	chr11:46501436-46669636	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv541031	chr11:46501436-46669636	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46456800-46515000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:46464200-46513000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:46465000-46513400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:46465200-46504400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:46465600-46511200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr11:46478400-46504800	Weak transcription	Fetal Kidney	kidney
7	chr11:46479000-46513400	Weak transcription	Spleen	Spleen
8	chr11:46479000-46525600	Weak transcription	Lung	lung
9	chr11:46485600-46511200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:46486000-46511400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:46486000-46511400	Weak transcription	HSMMtube	muscle
12	chr11:46486200-46513200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:46486200-46525800	Weak transcription	Fetal Brain Female	brain
14	chr11:46486400-46507400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:46486400-46513600	Weak transcription	Esophagus	oesophagus
16	chr11:46486600-46518800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:46487000-46511400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:46487400-46514200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:46487600-46507200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:46487600-46507400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:46487600-46513600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:46487600-46514200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:46487600-46515000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:46487800-46508000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:46488000-46511400	Weak transcription	Gastric	stomach
26	chr11:46488200-46513400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:46488200-46515000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:46489600-46511000	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:46489600-46512000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:46490000-46507000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:46490000-46511200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:46490000-46512000	Weak transcription	Adipose Nuclei	Adipose
33	chr11:46490000-46512400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:46490200-46511200	Weak transcription	Placenta	Placenta
35	chr11:46490200-46525800	Weak transcription	Aorta	Aorta
36	chr11:46490400-46511200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:46490600-46504800	Weak transcription	Fetal Stomach	stomach
38	chr11:46490600-46511200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:46492800-46511400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:46492800-46511400	Weak transcription	HSMM	muscle
41	chr11:46492800-46513400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:46494000-46511400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:46494400-46511000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:46494400-46513600	Weak transcription	Brain Angular Gyrus	brain
45	chr11:46494400-46515000	Weak transcription	NH-A	brain
46	chr11:46494600-46511000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:46494600-46511400	Weak transcription	Liver	Liver
48	chr11:46494800-46515000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr11:46494800-46519800	Weak transcription	Psoas Muscle	Psoas
50	chr11:46495000-46511200	Weak transcription	K562	blood

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