Variant report

Variant	rs2891617
Chromosome Location	chr11:46302075-46302076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46300583..46302153-chr11:46302372..46304323,2	MCF-7	breast:
2	chr11:46271383..46273893-chr11:46301365..46303113,2	K562	blood:
3	chr11:46263623..46265144-chr11:46301509..46304362,2	MCF-7	breast:
4	chr11:46257536..46260589-chr11:46299825..46303557,4	K562	blood:
5	chr11:46301943..46305036-chr11:46305581..46308212,3	K562	blood:
6	chr11:46299380..46302376-chr11:46328886..46330806,2	K562	blood:
7	chr11:46293083..46308698-chr11:46310742..46320666,35	K562	blood:
8	chr11:46299997..46302938-chr11:46322600..46325480,2	K562	blood:
9	chr11:46296992..46299391-chr11:46300223..46303625,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254639	Chromatin interaction
ENSG00000157613	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56692163	1.00[AMR][1000 genomes]
rs56851661	1.00[AMR][1000 genomes]
rs58371355	0.82[AFR][1000 genomes]
rs59379166	1.00[AMR][1000 genomes]
rs61183349	1.00[AMR][1000 genomes]
rs7117944	1.00[AMR][1000 genomes]
rs736633	1.00[AMR][1000 genomes]
rs7932067	1.00[AMR][1000 genomes]
rs7946071	1.00[AMR][1000 genomes]
rs7946801	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46298400-46302400	Weak transcription	Fetal Heart	heart
2	chr11:46300200-46302600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:46300400-46303800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:46300600-46302400	Weak transcription	Small Intestine	intestine
5	chr11:46300600-46302600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:46300600-46302800	Active TSS	GM12878-XiMat	blood
7	chr11:46300600-46303400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:46300600-46303400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:46300600-46303400	Enhancers	Ovary	ovary
10	chr11:46300600-46303600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr11:46300600-46303600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:46300600-46303600	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:46300800-46302600	Transcr. at gene 5' and 3'	HSMM	muscle
14	chr11:46300800-46303600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:46301000-46302200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:46301000-46302200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:46301000-46302200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr11:46301000-46302200	Weak transcription	A549	lung
19	chr11:46301000-46302400	Weak transcription	Hela-S3	cervix
20	chr11:46301000-46303000	Active TSS	Gastric	stomach
21	chr11:46301000-46303400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:46301200-46302200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:46301200-46302200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:46301200-46302200	Weak transcription	Left Ventricle	heart
25	chr11:46301200-46302200	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr11:46301200-46302200	Active TSS	Rectal Smooth Muscle	rectum
27	chr11:46301200-46302200	Active TSS	HSMMtube	muscle
28	chr11:46301200-46302600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:46301200-46303600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr11:46301400-46302200	Active TSS	NHLF	lung
31	chr11:46301400-46302400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:46301400-46302600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:46301400-46303000	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr11:46301400-46303400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr11:46301400-46311400	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:46301600-46302200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:46301600-46302200	Active TSS	Muscle Satellite Cultured Cells	--
38	chr11:46301600-46302200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:46301600-46302200	Active TSS	Colonic Mucosa	Colon
40	chr11:46301600-46302200	Active TSS	Duodenum Mucosa	Duodenum
41	chr11:46301600-46302200	Enhancers	Stomach Mucosa	stomach
42	chr11:46301600-46302200	Active TSS	Stomach Smooth Muscle	stomach
43	chr11:46301600-46302600	Enhancers	Pancreas	Pancrea
44	chr11:46301600-46302600	Weak transcription	Right Ventricle	heart
45	chr11:46301600-46302800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr11:46301600-46303600	Enhancers	Fetal Lung	lung
47	chr11:46301600-46304000	Enhancers	Fetal Thymus	thymus
48	chr11:46301600-46304200	Enhancers	Placenta	Placenta
49	chr11:46301600-46306800	Weak transcription	Lung	lung
50	chr11:46301600-46307200	Weak transcription	Right Atrium	heart

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