Variant report

Variant	rs59379166
Chromosome Location	chr11:46337246-46337247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46334610..46337424-chr11:46352781..46354879,2	K562	blood:
2	chr11:46330662..46333267-chr11:46335331..46337838,2	MCF-7	breast:
3	chr11:46259014..46262894-chr11:46335326..46342667,9	K562	blood:
4	chr11:46142729..46144832-chr11:46337224..46339100,2	MCF-7	breast:
5	chr11:46257955..46261525-chr11:46335370..46339844,7	K562	blood:
6	chr11:46334621..46337409-chr11:46368237..46370460,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157613	Chromatin interaction
ENSG00000135365	Chromatin interaction
ENSG00000149091	Chromatin interaction
ENSG00000254639	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2891617	1.00[AMR][1000 genomes]
rs56692163	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56851661	1.00[AMR][1000 genomes]
rs58031860	1.00[AMR][1000 genomes]
rs61183349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110413	1.00[AMR][1000 genomes]
rs7117944	1.00[AMR][1000 genomes]
rs736633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7932067	1.00[AMR][1000 genomes]
rs7946071	1.00[AMR][1000 genomes]
rs7946801	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1797501	chr11:46315437-46402521	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46319200-46337600	Weak transcription	Right Ventricle	heart
2	chr11:46319200-46342000	Weak transcription	Ovary	ovary
3	chr11:46319400-46346000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:46321400-46340200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:46322000-46345000	Weak transcription	Small Intestine	intestine
6	chr11:46329000-46344000	Strong transcription	Fetal Intestine Large	intestine
7	chr11:46329200-46346800	Weak transcription	Fetal Kidney	kidney
8	chr11:46330000-46341800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:46330200-46349400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:46330600-46338800	Weak transcription	Left Ventricle	heart
11	chr11:46330600-46339800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:46330600-46339800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:46330600-46344800	Strong transcription	Fetal Intestine Small	intestine
14	chr11:46330600-46345000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:46330600-46346200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:46330600-46348200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:46330600-46348800	Strong transcription	Fetal Stomach	stomach
18	chr11:46330800-46338600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:46330800-46340600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:46330800-46344600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:46330800-46348200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:46331200-46339000	Weak transcription	Adipose Nuclei	Adipose
23	chr11:46331200-46344200	Strong transcription	Osteobl	bone
24	chr11:46331400-46344800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:46331400-46345000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:46331600-46338200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:46331600-46339200	Weak transcription	Primary B cells from cord blood	blood
28	chr11:46331600-46343800	Strong transcription	NHLF	lung
29	chr11:46331600-46345000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:46331800-46337400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:46331800-46339800	Weak transcription	GM12878-XiMat	blood
32	chr11:46331800-46344000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:46332000-46344600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:46332200-46344200	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr11:46333000-46337600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:46333200-46340800	Strong transcription	Fetal Lung	lung
37	chr11:46334400-46340000	Weak transcription	Lung	lung
38	chr11:46334400-46346000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:46334800-46338000	Weak transcription	Colonic Mucosa	Colon
40	chr11:46335400-46337400	Weak transcription	HSMMtube	muscle
41	chr11:46335400-46337600	Weak transcription	Gastric	stomach
42	chr11:46335800-46345000	Strong transcription	NH-A	brain
43	chr11:46336400-46337600	Enhancers	A549	lung
44	chr11:46336400-46338800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:46336400-46340400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:46336400-46341800	Enhancers	Primary hematopoietic stem cells	blood
47	chr11:46336400-46345200	Strong transcription	HSMM	muscle
48	chr11:46336600-46337400	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr11:46336600-46337400	Enhancers	Placenta	Placenta
50	chr11:46336600-46337600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links