Variant report

Variant	rs7121799
Chromosome Location	chr11:46827157-46827158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46815521..46817270-chr11:46825873..46827721,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1037873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55762640	1.00[AMR][1000 genomes]
rs56771531	0.89[AFR][1000 genomes]
rs57030907	0.91[AFR][1000 genomes]
rs58031860	1.00[AMR][1000 genomes]
rs58438537	1.00[AMR][1000 genomes]
rs59342331	0.83[AFR][1000 genomes]
rs61733844	0.91[AFR][1000 genomes]
rs7110413	1.00[AMR][1000 genomes]
rs7928628	0.91[AFR][1000 genomes]
rs7937765	0.89[AFR][1000 genomes]
rs7938644	1.00[AMR][1000 genomes]
rs7942150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946801	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430382	chr11:46743135-46849360	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3335996	chr11:46818751-46843532	Genic enhancers Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46761400-46840000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:46761400-46845200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:46762600-46841400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:46762800-46835600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr11:46762800-46842400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:46763400-46839600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:46778800-46841200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:46782600-46847400	Weak transcription	Stomach Mucosa	stomach
9	chr11:46787000-46828200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:46788200-46841400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:46788600-46840600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:46811000-46830400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:46812000-46847600	Weak transcription	Right Ventricle	heart
14	chr11:46813200-46837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:46814600-46845800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:46815200-46847800	Weak transcription	Gastric	stomach
17	chr11:46816200-46830200	Strong transcription	NHDF-Ad	bronchial
18	chr11:46816400-46847800	Weak transcription	Spleen	Spleen
19	chr11:46817600-46831200	Weak transcription	Lung	lung
20	chr11:46817600-46836800	Weak transcription	Esophagus	oesophagus
21	chr11:46818800-46830400	Weak transcription	Aorta	Aorta
22	chr11:46818800-46846800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:46819000-46847400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr11:46819200-46847600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr11:46819400-46828400	Weak transcription	Fetal Brain Male	brain
26	chr11:46819600-46828800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:46819600-46847600	Weak transcription	Brain Angular Gyrus	brain
28	chr11:46819600-46847800	Weak transcription	Pancreas	Pancrea
29	chr11:46819800-46847400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:46820000-46827600	Weak transcription	Brain Substantia Nigra	brain
31	chr11:46820000-46828400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:46820000-46828400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:46820000-46830400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:46820000-46837000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:46820200-46828000	Weak transcription	Brain Anterior Caudate	brain
36	chr11:46820400-46827600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:46820600-46827600	Weak transcription	HSMMtube	muscle
38	chr11:46820600-46828200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:46820600-46830800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:46820800-46847600	Weak transcription	Small Intestine	intestine
41	chr11:46821000-46836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:46821000-46837000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:46821400-46827400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:46821400-46828000	Weak transcription	HepG2	liver
45	chr11:46821600-46828200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:46821600-46847600	Weak transcription	Psoas Muscle	Psoas
47	chr11:46822600-46828400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr11:46822800-46827600	Weak transcription	Primary B cells from cord blood	blood
49	chr11:46822800-46828000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:46823000-46828000	Weak transcription	Left Ventricle	heart

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