Variant report

Variant	rs1037873
Chromosome Location	chr11:46850192-46850193
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46849432..46851635-chr11:46862564..46865490,2	K562	blood:
2	chr11:46846632..46851422-chr11:46865562..46870107,6	K562	blood:
3	chr11:46842194..46845139-chr11:46848231..46850202,2	K562	blood:

Variant related genes	Relation type
ENSG00000247675	Chromatin interaction
ENSG00000175216	Chromatin interaction

rs_ID	r²[population]
rs55762640	1.00[AMR][1000 genomes]
rs56771531	0.89[AFR][1000 genomes]
rs57030907	0.91[AFR][1000 genomes]
rs58031860	1.00[AMR][1000 genomes]
rs58438537	1.00[AMR][1000 genomes]
rs59342331	0.83[AFR][1000 genomes]
rs61733844	0.91[AFR][1000 genomes]
rs7121799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928628	0.91[AFR][1000 genomes]
rs7937765	0.89[AFR][1000 genomes]
rs7938644	1.00[AMR][1000 genomes]
rs7942150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46841000-46853400	Weak transcription	Dnd41	blood
2	chr11:46848400-46856800	Weak transcription	Small Intestine	intestine
3	chr11:46848400-46863800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:46848400-46866200	Weak transcription	Placenta	Placenta
5	chr11:46848600-46850200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:46848600-46850200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:46848600-46851200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:46848800-46850200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:46848800-46850200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:46848800-46850200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:46848800-46850200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:46848800-46850200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:46848800-46850200	Enhancers	Adipose Nuclei	Adipose
14	chr11:46848800-46850200	Enhancers	Brain Anterior Caudate	brain
15	chr11:46848800-46850200	Enhancers	Brain Substantia Nigra	brain
16	chr11:46848800-46850200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr11:46848800-46850200	Enhancers	HMEC	breast
18	chr11:46848800-46850400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr11:46848800-46850400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:46848800-46850400	Enhancers	Osteobl	bone
21	chr11:46848800-46850600	Enhancers	Fetal Heart	heart
22	chr11:46848800-46850600	Enhancers	Stomach Mucosa	stomach
23	chr11:46848800-46851000	Enhancers	Fetal Lung	lung
24	chr11:46848800-46851400	Enhancers	K562	blood
25	chr11:46848800-46854000	Weak transcription	Fetal Intestine Small	intestine
26	chr11:46848800-46854400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:46848800-46857600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:46848800-46862200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:46848800-46865800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:46849000-46850200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:46849000-46850200	Enhancers	Colon Smooth Muscle	Colon
32	chr11:46849000-46850200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr11:46849000-46850400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr11:46849000-46850400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:46849000-46850400	Enhancers	NHDF-Ad	bronchial
36	chr11:46849000-46850600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:46849000-46851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:46849000-46853200	Enhancers	HepG2	liver
39	chr11:46849000-46854000	Weak transcription	Fetal Intestine Large	intestine
40	chr11:46849000-46854400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:46849000-46856400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:46849000-46856400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:46849000-46857000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:46849000-46857200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:46849000-46858400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr11:46849000-46865200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:46849000-46865200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:46849000-46865800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:46849000-46865800	Weak transcription	Thymus	Thymus
50	chr11:46849000-46866200	Weak transcription	Primary B cells from cord blood	blood

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