Variant report

Variant	rs73423782
Chromosome Location	chr9:26656318-26656319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73423785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423800	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425883	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv892858	chr9:26609613-26783463	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv466330	chr9:26641557-26691668	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
8	nsv613939	chr9:26641557-26691668	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
9	nsv466331	chr9:26643035-26689442	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv613940	chr9:26643035-26689442	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
11	nsv892859	chr9:26643035-26691668	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26656000-26656400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr9:26656000-26656400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:26656000-26656400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:26656000-26656400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:26656000-26656400	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr9:26656000-26656400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:26656000-26656400	Active TSS	Fetal Kidney	kidney
8	chr9:26656000-26656400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr9:26656000-26656400	Enhancers	Fetal Lung	lung
10	chr9:26656000-26656400	Active TSS	A549	lung
11	chr9:26656000-26656400	Enhancers	Osteobl	bone
12	chr9:26656000-26656800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:26656000-26656800	Enhancers	Fetal Muscle Leg	muscle
14	chr9:26656200-26656400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr9:26656200-26656400	Enhancers	Brain Angular Gyrus	brain
16	chr9:26656200-26656400	Flanking Active TSS	Brain Cingulate Gyrus	brain
17	chr9:26656200-26656400	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr9:26656200-26656400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr9:26656200-26656400	Flanking Active TSS	HMEC	breast
20	chr9:26656200-26656800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:26656200-26656800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr9:26656200-26657200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:26656200-26659600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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