Variant report

Variant	rs73424690
Chromosome Location	chr15:58816781-58816782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58815189..58818138-chr15:58821018..58822626,2	K562	blood:
2	chr15:58815957..58817851-chr15:58819397..58821378,2	MCF-7	breast:
3	chr15:58816638..58820223-chr15:58821126..58823355,3	K562	blood:
4	chr15:58815750..58818981-chr15:58825032..58827694,3	K562	blood:
5	chr15:58812962..58815052-chr15:58815681..58818546,2	K562	blood:

Variant related genes	Relation type
ENSG00000259476	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16940449	1.00[AMR][1000 genomes]
rs41292500	1.00[AMR][1000 genomes]
rs73424691	1.00[AMR][1000 genomes]
rs73424693	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58807800-58820200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:58809600-58817000	Enhancers	Brain Substantia Nigra	brain
3	chr15:58812600-58816800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr15:58812600-58818000	Enhancers	Placenta	Placenta
5	chr15:58812800-58818600	Weak transcription	Gastric	stomach
6	chr15:58813200-58817000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:58813600-58816800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:58813800-58819000	Weak transcription	Fetal Intestine Large	intestine
9	chr15:58813800-58819000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:58814000-58817000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr15:58814000-58819000	Weak transcription	Stomach Mucosa	stomach
12	chr15:58814200-58817000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:58814600-58819000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr15:58814600-58819400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:58814600-58819600	Weak transcription	Fetal Kidney	kidney
16	chr15:58815000-58816800	Enhancers	Ovary	ovary
17	chr15:58815000-58818200	Weak transcription	NHDF-Ad	bronchial
18	chr15:58815000-58819400	Weak transcription	Lung	lung
19	chr15:58815000-58819600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:58815200-58820000	Weak transcription	Colon Smooth Muscle	Colon
21	chr15:58815400-58817600	Weak transcription	Right Ventricle	heart
22	chr15:58815400-58818200	Weak transcription	Fetal Thymus	thymus
23	chr15:58815400-58818200	Weak transcription	Right Atrium	heart
24	chr15:58815400-58819200	Weak transcription	Esophagus	oesophagus
25	chr15:58815400-58819600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:58815400-58820000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:58815400-58820800	Weak transcription	Spleen	Spleen
28	chr15:58815600-58816800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:58815600-58818400	Weak transcription	Adipose Nuclei	Adipose
30	chr15:58815600-58818400	Weak transcription	Aorta	Aorta
31	chr15:58815600-58820800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:58815600-58821000	Weak transcription	NHEK	skin
33	chr15:58815800-58818200	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:58815800-58818200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:58815800-58818600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:58815800-58820000	Weak transcription	Psoas Muscle	Psoas
37	chr15:58816000-58820200	Enhancers	A549	lung
38	chr15:58816200-58816800	Enhancers	HepG2	liver
39	chr15:58816200-58817000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:58816200-58817000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr15:58816200-58817000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr15:58816200-58817600	Weak transcription	Left Ventricle	heart
43	chr15:58816200-58817600	Weak transcription	Pancreas	Pancrea
44	chr15:58816200-58820000	Enhancers	Liver	Liver
45	chr15:58816400-58816800	Enhancers	Primary T cells from cord blood	blood
46	chr15:58816400-58817600	Weak transcription	Primary B cells from cord blood	blood
47	chr15:58816400-58818000	Enhancers	Placenta Amnion	Placenta Amnion

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