Variant report

Variant	rs73426543
Chromosome Location	chr11:15222729-15222730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58177415	1.00[AMR][1000 genomes]
rs58808864	1.00[AMR][1000 genomes]
rs59391528	1.00[AMR][1000 genomes]
rs73426533	1.00[AMR][1000 genomes]
rs73426538	1.00[AMR][1000 genomes]
rs73426584	1.00[AMR][1000 genomes]
rs73426600	1.00[AMR][1000 genomes]
rs73428537	1.00[AMR][1000 genomes]
rs73428556	1.00[AMR][1000 genomes]
rs73428563	1.00[AMR][1000 genomes]
rs73430559	1.00[AMR][1000 genomes]
rs73430567	1.00[AMR][1000 genomes]
rs73430570	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv897010	chr11:15219258-15279421	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15218600-15229400	Weak transcription	Gastric	stomach
2	chr11:15219200-15234600	Weak transcription	Fetal Intestine Small	intestine
3	chr11:15219400-15223000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr11:15219400-15223200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:15221000-15222800	Enhancers	Brain Germinal Matrix	brain
6	chr11:15221000-15222800	Enhancers	Pancreas	Pancrea
7	chr11:15221600-15223000	Weak transcription	HSMMtube	muscle
8	chr11:15221600-15227600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:15221800-15226800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:15222200-15223800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:15222200-15244600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:15222400-15222800	Enhancers	Right Ventricle	heart
13	chr11:15222400-15223200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:15222600-15224000	Weak transcription	Liver	Liver
15	chr11:15222600-15230000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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