Variant report

Variant	rs73428563
Chromosome Location	chr11:15275836-15275837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58177415	1.00[AMR][1000 genomes]
rs58808864	1.00[AMR][1000 genomes]
rs59391528	1.00[AMR][1000 genomes]
rs73426533	1.00[AMR][1000 genomes]
rs73426538	1.00[AMR][1000 genomes]
rs73426543	1.00[AMR][1000 genomes]
rs73426584	1.00[AMR][1000 genomes]
rs73426600	1.00[AMR][1000 genomes]
rs73428537	1.00[AMR][1000 genomes]
rs73428556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73430559	1.00[AMR][1000 genomes]
rs73430567	1.00[AMR][1000 genomes]
rs73430570	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv897010	chr11:15219258-15279421	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv832072	chr11:15226843-15392190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15267600-15276600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:15274400-15279800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links