Variant report

Variant	rs73426620
Chromosome Location	chr6:43997054-43997055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:43995552..43997758-chr6:44027806..44030081,2	K562	blood:
2	chr6:43996792..44000305-chr6:44001908..44006580,5	K562	blood:
3	chr6:43962135..43965104-chr6:43996348..43998695,2	K562	blood:
4	chr6:43994698..43996237-chr6:43996941..43999388,2	K562	blood:
5	chr6:43995552..43998712-chr6:44027806..44030689,4	K562	blood:
6	chr6:43992327..43995024-chr6:43996650..43999116,2	MCF-7	breast:
7	chr6:43995090..43997129-chr6:44004019..44005828,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59822068	0.98[ASN][1000 genomes]
rs59959170	0.83[AFR][1000 genomes]
rs73426617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73426618	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462934	chr6:43956615-44007446	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv603001	chr6:43956615-44007446	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43979400-44010400	Weak transcription	Pancreas	Pancrea
2	chr6:43979600-44002200	Weak transcription	Right Ventricle	heart
3	chr6:43988600-43998600	Weak transcription	Spleen	Spleen
4	chr6:43988600-44009200	Weak transcription	Right Atrium	heart
5	chr6:43993200-43999000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:43993200-44009000	Weak transcription	Esophagus	oesophagus
7	chr6:43994800-43997200	Enhancers	K562	blood
8	chr6:43994800-44003200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:43995000-44002000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:43995200-43999200	Enhancers	Fetal Stomach	stomach
11	chr6:43995400-43998200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:43995800-43997400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:43996000-43997400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:43996200-43997200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:43996200-43997200	Enhancers	HMEC	breast
16	chr6:43996200-43997400	Enhancers	Stomach Mucosa	stomach
17	chr6:43996200-43998000	Enhancers	Fetal Muscle Leg	muscle
18	chr6:43996200-43998800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:43996400-43997200	Enhancers	Hela-S3	cervix
20	chr6:43996400-43997400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:43996400-43997400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:43996400-43997400	Enhancers	Osteobl	bone
23	chr6:43996400-43997600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:43996400-43997600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:43996400-43997600	Enhancers	NHEK	skin
26	chr6:43996400-43997800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:43996400-43999200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:43996600-43997200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:43996600-43997600	Enhancers	Fetal Muscle Trunk	muscle
30	chr6:43996600-43998200	Enhancers	NHDF-Ad	bronchial
31	chr6:43996800-43997800	Enhancers	Fetal Lung	lung
32	chr6:43996800-43998200	Enhancers	NHLF	lung
33	chr6:43996800-44002000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr6:43997000-43997400	Enhancers	Gastric	stomach
35	chr6:43997000-43997800	Enhancers	Ovary	ovary
36	chr6:43997000-44001800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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