Variant report

Variant	rs73426618
Chromosome Location	chr6:43995995-43995996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:43994698..43996237-chr6:43996941..43999388,2	K562	blood:
2	chr6:43995552..43997758-chr6:44027806..44030081,2	K562	blood:
3	chr6:43995552..43998712-chr6:44027806..44030689,4	K562	blood:
4	chr6:43995090..43997129-chr6:44004019..44005828,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59959170	1.00[AMR][1000 genomes]
rs73422548	1.00[AMR][1000 genomes]
rs73426617	0.84[AFR][1000 genomes]
rs73426620	0.84[AFR][1000 genomes]
rs73426655	1.00[AMR][1000 genomes]
rs7742822	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462934	chr6:43956615-44007446	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv603001	chr6:43956615-44007446	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43979400-44010400	Weak transcription	Pancreas	Pancrea
2	chr6:43979600-44002200	Weak transcription	Right Ventricle	heart
3	chr6:43988200-43996400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:43988600-43998600	Weak transcription	Spleen	Spleen
5	chr6:43988600-44009200	Weak transcription	Right Atrium	heart
6	chr6:43990400-43996200	Weak transcription	NHLF	lung
7	chr6:43990800-43996400	Weak transcription	Osteobl	bone
8	chr6:43993000-43996400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:43993200-43996200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:43993200-43996400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:43993200-43996400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:43993200-43996600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:43993200-43996600	Weak transcription	NHDF-Ad	bronchial
14	chr6:43993200-43999000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:43993200-44009000	Weak transcription	Esophagus	oesophagus
16	chr6:43993400-43996200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:43993400-43996400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:43993400-43996400	Weak transcription	NHEK	skin
19	chr6:43993800-43996200	Weak transcription	HMEC	breast
20	chr6:43993800-43996400	Weak transcription	Hela-S3	cervix
21	chr6:43993800-43996800	Weak transcription	Fetal Lung	lung
22	chr6:43994800-43997200	Enhancers	K562	blood
23	chr6:43994800-44003200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:43995000-44002000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:43995200-43999200	Enhancers	Fetal Stomach	stomach
26	chr6:43995400-43998200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:43995600-43996000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:43995800-43997400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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