Variant report

Variant	rs73426655
Chromosome Location	chr6:44009984-44009985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:44007005..44011149-chr6:44017197..44020435,5	MCF-7	breast:
2	chr6:44009797..44010477-chr9:139304731..139305297,2	Hela-S3	cervix:
3	chr6:43595271..43597065-chr6:44009631..44011896,2	MCF-7	breast:
4	chr6:44009572..44011205-chr6:44040980..44043543,2	K562	blood:
5	chr6:43603690..43605360-chr6:44009422..44011771,2	K562	blood:
6	chr6:44008736..44011272-chr6:44028174..44029851,2	MCF-7	breast:
7	chr6:44000324..44004665-chr6:44006537..44011128,6	K562	blood:
8	chr6:43951956..43954064-chr6:44008799..44011595,2	K562	blood:
9	chr6:44009300..44010942-chr6:44014592..44016853,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000237686	Chromatin interaction
ENSG00000172432	Chromatin interaction
ENSG00000165688	Chromatin interaction
ENSG00000231881	Chromatin interaction
ENSG00000165689	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59959170	1.00[AMR][1000 genomes]
rs73422548	1.00[AMR][1000 genomes]
rs73426618	1.00[AMR][1000 genomes]
rs7742822	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	esv19546	chr6:44008476-44011596	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43979400-44010400	Weak transcription	Pancreas	Pancrea
2	chr6:44002400-44010200	Weak transcription	Right Ventricle	heart
3	chr6:44004200-44013200	Weak transcription	Lung	lung
4	chr6:44005800-44011600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:44005800-44036800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:44006000-44011600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:44006200-44012400	Enhancers	HMEC	breast
8	chr6:44006400-44011800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:44006400-44012400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:44006600-44011600	Enhancers	NHEK	skin
11	chr6:44006600-44012400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:44006800-44012000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:44006800-44012000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:44006800-44012200	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:44006800-44015400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:44007800-44012200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:44007800-44012400	Enhancers	Fetal Stomach	stomach
18	chr6:44008000-44011400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr6:44008000-44012200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:44008000-44012200	Enhancers	Fetal Muscle Leg	muscle
21	chr6:44008000-44012600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:44008200-44010000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:44008200-44011600	Enhancers	HUVEC	blood vessel
24	chr6:44008200-44012200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:44008200-44012400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:44008200-44012400	Enhancers	NHDF-Ad	bronchial
27	chr6:44008200-44013400	Enhancers	Brain Anterior Caudate	brain
28	chr6:44008400-44011400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:44008400-44012200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:44008400-44015200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:44008600-44011000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:44008600-44011200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr6:44008600-44011400	Enhancers	H9 Cell Line	embryonic stem cell
34	chr6:44008600-44011800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:44008600-44012000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:44008600-44012400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:44008600-44013800	Enhancers	Rectal Smooth Muscle	rectum
38	chr6:44008800-44011000	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr6:44009000-44010000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:44009000-44010000	Flanking Active TSS	NH-A	brain
41	chr6:44009000-44010800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:44009000-44011000	Enhancers	Spleen	Spleen
43	chr6:44009000-44011000	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr6:44009000-44011200	Enhancers	Duodenum Mucosa	Duodenum
45	chr6:44009000-44011400	Enhancers	Adipose Nuclei	Adipose
46	chr6:44009000-44011400	Enhancers	Fetal Thymus	thymus
47	chr6:44009000-44011600	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr6:44009000-44011600	Enhancers	Esophagus	oesophagus
49	chr6:44009000-44011600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr6:44009000-44012000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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