Variant report

Variant	rs73422548
Chromosome Location	chr6:44023535-44023536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:43735897..43741772-chr6:44023096..44028958,9	K562	blood:
2	chr6:43904528..43907031-chr6:44021736..44024723,2	K562	blood:
3	chr6:44017301..44019472-chr6:44022118..44024847,3	MCF-7	breast:
4	chr6:44021804..44024642-chr6:44039251..44041527,2	MCF-7	breast:
5	chr6:43737832..43742608-chr6:44022679..44030318,9	MCF-7	breast:
6	chr6:44018949..44023934-chr6:44025217..44028102,4	MCF-7	breast:
7	chr6:44007443..44009968-chr6:44021480..44024276,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112715	Chromatin interaction
ENSG00000272114	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59959170	1.00[AMR][1000 genomes]
rs72548772	1.00[ASN][1000 genomes]
rs73426618	1.00[AMR][1000 genomes]
rs73426655	1.00[AMR][1000 genomes]
rs7742822	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44005800-44036800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:44013400-44023600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:44014600-44023600	Enhancers	NHLF	lung
4	chr6:44016000-44030600	Enhancers	NHDF-Ad	bronchial
5	chr6:44016600-44023600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:44016600-44029800	Weak transcription	Psoas Muscle	Psoas
7	chr6:44016600-44030400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:44016600-44030400	Enhancers	Osteobl	bone
9	chr6:44016800-44023600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:44016800-44023600	Enhancers	HMEC	breast
11	chr6:44016800-44023600	Enhancers	NH-A	brain
12	chr6:44017400-44023600	Enhancers	A549	lung
13	chr6:44017800-44026000	Weak transcription	Gastric	stomach
14	chr6:44019000-44024200	Weak transcription	Fetal Heart	heart
15	chr6:44019200-44024800	Weak transcription	Colonic Mucosa	Colon
16	chr6:44019400-44028600	Enhancers	Placenta	Placenta
17	chr6:44019600-44024400	Weak transcription	Left Ventricle	heart
18	chr6:44019800-44024800	Weak transcription	Right Ventricle	heart
19	chr6:44019800-44025400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:44020200-44025400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:44020200-44025600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr6:44020200-44026000	Weak transcription	Fetal Intestine Large	intestine
23	chr6:44020200-44026000	Weak transcription	Fetal Thymus	thymus
24	chr6:44020200-44030400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:44020400-44023800	Weak transcription	Fetal Brain Female	brain
26	chr6:44020400-44024400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:44020400-44026000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:44020600-44024200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:44020800-44024200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:44020800-44024200	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:44020800-44024400	Weak transcription	Brain Anterior Caudate	brain
32	chr6:44020800-44024400	Weak transcription	Brain Substantia Nigra	brain
33	chr6:44020800-44024800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:44020800-44026600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:44020800-44027600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:44020800-44036200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:44021000-44024000	Weak transcription	Fetal Brain Male	brain
38	chr6:44021000-44024200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:44021000-44024200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:44021000-44025000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:44021000-44025400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:44021200-44023800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:44021200-44023800	Weak transcription	Brain Germinal Matrix	brain
44	chr6:44021200-44024200	Weak transcription	Brain Angular Gyrus	brain
45	chr6:44021200-44024400	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:44021200-44024600	Weak transcription	Lung	lung
47	chr6:44021200-44024800	Weak transcription	Esophagus	oesophagus
48	chr6:44021400-44024800	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr6:44021400-44024800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:44021600-44024600	Weak transcription	Monocytes-CD14+_RO01746	blood

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