Variant report
| Variant | rs73427869 |
|---|---|
| Chromosome Location | chr6:49903603-49903604 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49896737..49899736-chr6:49902521..49904667,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10948530 | 1.00[EUR][1000 genomes] |
| rs12111232 | 1.00[EUR][1000 genomes] |
| rs16879837 | 1.00[EUR][1000 genomes] |
| rs28553529 | 1.00[EUR][1000 genomes] |
| rs28738068 | 1.00[EUR][1000 genomes] |
| rs35289289 | 1.00[EUR][1000 genomes] |
| rs57160213 | 1.00[EUR][1000 genomes] |
| rs57245652 | 1.00[EUR][1000 genomes] |
| rs57254982 | 1.00[EUR][1000 genomes] |
| rs57341323 | 1.00[EUR][1000 genomes] |
| rs58055962 | 1.00[EUR][1000 genomes] |
| rs58116328 | 1.00[EUR][1000 genomes] |
| rs58662430 | 1.00[EUR][1000 genomes] |
| rs59244495 | 1.00[EUR][1000 genomes] |
| rs59713335 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61041053 | 1.00[EUR][1000 genomes] |
| rs61041067 | 1.00[EUR][1000 genomes] |
| rs6919805 | 1.00[EUR][1000 genomes] |
| rs73423739 | 1.00[EUR][1000 genomes] |
| rs73425837 | 1.00[EUR][1000 genomes] |
| rs73425844 | 1.00[EUR][1000 genomes] |
| rs73425861 | 1.00[EUR][1000 genomes] |
| rs73425868 | 1.00[EUR][1000 genomes] |
| rs73425873 | 1.00[EUR][1000 genomes] |
| rs73425895 | 1.00[EUR][1000 genomes] |
| rs73425899 | 1.00[EUR][1000 genomes] |
| rs73441840 | 1.00[EUR][1000 genomes] |
| rs73441857 | 1.00[EUR][1000 genomes] |
| rs9473702 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv462944 | chr6:49869448-49948059 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv603091 | chr6:49869448-49948059 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49903000-49907000 | Weak transcription | K562 | blood |
