Variant report
| Variant | rs9473702 |
|---|---|
| Chromosome Location | chr6:49926086-49926087 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000214643 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10948530 | 1.00[EUR][1000 genomes] |
| rs12111232 | 1.00[EUR][1000 genomes] |
| rs16879837 | 1.00[EUR][1000 genomes] |
| rs28553529 | 1.00[EUR][1000 genomes] |
| rs28738068 | 1.00[EUR][1000 genomes] |
| rs35289289 | 1.00[EUR][1000 genomes] |
| rs57160213 | 1.00[EUR][1000 genomes] |
| rs57245652 | 1.00[EUR][1000 genomes] |
| rs57254982 | 1.00[EUR][1000 genomes] |
| rs57341323 | 1.00[EUR][1000 genomes] |
| rs58055962 | 1.00[EUR][1000 genomes] |
| rs58116328 | 1.00[EUR][1000 genomes] |
| rs58662430 | 1.00[EUR][1000 genomes] |
| rs59244495 | 1.00[EUR][1000 genomes] |
| rs59713335 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61041053 | 1.00[EUR][1000 genomes] |
| rs61041067 | 1.00[EUR][1000 genomes] |
| rs6919805 | 1.00[EUR][1000 genomes] |
| rs73425837 | 1.00[EUR][1000 genomes] |
| rs73425844 | 1.00[EUR][1000 genomes] |
| rs73425861 | 1.00[EUR][1000 genomes] |
| rs73425868 | 1.00[EUR][1000 genomes] |
| rs73425873 | 1.00[EUR][1000 genomes] |
| rs73425895 | 1.00[EUR][1000 genomes] |
| rs73425899 | 1.00[EUR][1000 genomes] |
| rs73427869 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv462944 | chr6:49869448-49948059 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv603091 | chr6:49869448-49948059 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv970330 | chr6:49921724-49940183 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
