Variant report

Variant	rs73428425
Chromosome Location	chr7:112056735-112056736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112055131..112056748-chr7:112061740..112063861,3	MCF-7	breast:
2	chr7:112054145..112057717-chr7:112058317..112061377,3	K562	blood:
3	chr7:112055161..112057071-chr7:112058715..112061690,2	MCF-7	breast:
4	chr7:112053959..112058011-chr7:112089104..112092928,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58457277	0.91[AFR][1000 genomes]
rs73424456	0.87[AFR][1000 genomes]
rs73426417	0.87[AFR][1000 genomes]
rs73426460	0.91[AFR][1000 genomes]
rs73426479	0.91[AFR][1000 genomes]
rs73428424	1.00[AFR][1000 genomes]
rs73428427	1.00[AFR][1000 genomes]
rs73428453	0.96[AFR][1000 genomes]
rs73428460	0.96[AFR][1000 genomes]
rs73428471	0.84[AFR][1000 genomes]
rs73428474	0.84[AFR][1000 genomes]
rs7804274	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112046000-112060400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:112051600-112062000	Weak transcription	Right Atrium	heart
3	chr7:112051800-112059800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:112051800-112060400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:112051800-112060400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:112052800-112059800	Weak transcription	HepG2	liver
7	chr7:112053800-112062000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr7:112054000-112059800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:112055400-112056800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:112055400-112057000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:112055400-112060400	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:112056000-112060400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:112056200-112056800	Enhancers	HUVEC	blood vessel
14	chr7:112056400-112058600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:112056400-112059800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:112056400-112060200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:112056400-112061800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:112056400-112061800	Weak transcription	Thymus	Thymus
19	chr7:112056600-112057200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:112056600-112057400	Enhancers	Dnd41	blood
21	chr7:112056600-112060400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr7:112056600-112061800	Weak transcription	Fetal Thymus	thymus

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