Variant report

Variant	rs73428460
Chromosome Location	chr7:112086683-112086684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58457277	0.87[AFR][1000 genomes]
rs73424456	0.83[AFR][1000 genomes]
rs73426417	0.83[AFR][1000 genomes]
rs73426460	0.87[AFR][1000 genomes]
rs73426479	0.87[AFR][1000 genomes]
rs73428424	0.96[AFR][1000 genomes]
rs73428425	0.96[AFR][1000 genomes]
rs73428427	0.96[AFR][1000 genomes]
rs73428453	0.91[AFR][1000 genomes]
rs73428471	0.81[AFR][1000 genomes]
rs73428474	0.81[AFR][1000 genomes]
rs7804274	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1801262	chr7:112071795-112104179	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
3	chr7:112075800-112089800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:112083600-112089600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:112083800-112087600	Weak transcription	Pancreas	Pancrea
6	chr7:112083800-112090000	Weak transcription	Gastric	stomach
7	chr7:112084600-112089400	Weak transcription	GM12878-XiMat	blood
8	chr7:112084800-112086800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr7:112085800-112088800	Weak transcription	HepG2	liver
10	chr7:112086000-112087400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:112086000-112087400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:112086200-112089600	Enhancers	Primary B cells from cord blood	blood
13	chr7:112086400-112089600	Enhancers	Fetal Intestine Small	intestine
14	chr7:112086600-112087000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:112086600-112087000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:112086600-112087000	Enhancers	Small Intestine	intestine
17	chr7:112086600-112087200	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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