Variant report

Variant	rs73429212
Chromosome Location	chr11:17008188-17008189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:17007364..17008907-chr11:17013978..17016924,2	MCF-7	breast:
2	chr11:17000932..17002613-chr11:17006244..17008801,2	MCF-7	breast:
3	chr11:16997178..16999092-chr11:17003135..17008712,4	MCF-7	breast:
4	chr11:16990664..16992333-chr11:17006870..17009444,2	MCF-7	breast:
5	chr11:16978066..16978747-chr11:17007921..17008692,2	MCF-7	breast:
6	chr11:16977925..16978855-chr11:17007771..17009390,6	MCF-7	breast:
7	chr11:17006921..17009898-chr11:17019659..17022087,3	MCF-7	breast:
8	chr11:16977925..16979137-chr11:17007771..17009326,6	MCF-7	breast:
9	chr11:17001912..17011357-chr11:17032509..17037700,15	MCF-7	breast:
10	chr11:17007115..17010774-chr11:17033404..17036243,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184669	Chromatin interaction
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11827240	0.89[AFR][1000 genomes]
rs73431225	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv983149	chr11:17003386-17011615	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16998000-17009000	Enhancers	Stomach Mucosa	stomach
2	chr11:16998000-17011800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:17000600-17011800	Enhancers	Pancreas	Pancrea
4	chr11:17001400-17010600	Enhancers	Placenta	Placenta
5	chr11:17003000-17009800	Enhancers	Brain Substantia Nigra	brain
6	chr11:17003600-17009800	Enhancers	Brain Anterior Caudate	brain
7	chr11:17004000-17008200	Weak transcription	Adipose Nuclei	Adipose
8	chr11:17004000-17008200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:17004000-17008400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:17004200-17011200	Weak transcription	Brain Germinal Matrix	brain
11	chr11:17004800-17034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:17005000-17009400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:17005400-17009000	Enhancers	Fetal Intestine Large	intestine
14	chr11:17005800-17012200	Enhancers	Gastric	stomach
15	chr11:17006000-17008400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr11:17006000-17009800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:17006000-17010000	Enhancers	Fetal Heart	heart
18	chr11:17006200-17013200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:17006400-17013400	Weak transcription	Fetal Stomach	stomach
20	chr11:17006400-17034000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:17006600-17008600	Enhancers	Lung	lung
22	chr11:17006600-17009400	Enhancers	Left Ventricle	heart
23	chr11:17006600-17010000	Enhancers	Liver	Liver
24	chr11:17006800-17008200	Enhancers	Fetal Lung	lung
25	chr11:17007000-17009400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:17007000-17010000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:17007000-17010000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:17007000-17010000	Enhancers	Fetal Kidney	kidney
29	chr11:17007000-17014200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:17007200-17008200	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr11:17007200-17009200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:17007200-17009400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:17007200-17009400	Enhancers	Right Ventricle	heart
34	chr11:17007200-17009600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:17007200-17009600	Enhancers	HepG2	liver
36	chr11:17007200-17009800	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr11:17007400-17008200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr11:17007400-17008600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr11:17007400-17008600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr11:17007400-17009200	Enhancers	Primary T cells fromperipheralblood	blood
41	chr11:17007400-17009800	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr11:17007400-17009800	Enhancers	H1 Cell Line	embryonic stem cell
43	chr11:17007400-17009800	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr11:17007400-17009800	Enhancers	A549	lung
45	chr11:17007600-17008200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:17007600-17008400	Enhancers	Dnd41	blood
47	chr11:17007600-17008600	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr11:17007600-17008600	Enhancers	Fetal Thymus	thymus
49	chr11:17007600-17008800	Enhancers	Primary B cells from peripheral blood	blood
50	chr11:17007600-17008800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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